Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29990 754 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19210 743 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19190 727 / 0 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT1G05700 717 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29180 697 / 0 RHS16 root hair specific 16 (.1.2) AT2G19230 673 / 0 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29450 669 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51790 655 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51800 653 / 0 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT1G51890 643 / 0 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038251 [exp] 1186 / 0 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10037051 [exp] 451 / 4e-141 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 441 / 3e-140 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 424 / 7e-134 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 424 / 8e-134 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 410 / 1e-128 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038172 [exp] 355 / 7e-109 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 340 / 2e-102 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 278 / 1e-82 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094600 [exp] 667 / 0 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 665 / 0 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 660 / 0 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 448 / 1e-148 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G181200 [exp] 444 / 1e-141 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 441 / 1e-140 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 432 / 2e-137 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 422 / 3e-133 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 372 / 2e-114 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 350 / 3e-106 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10025849 pacid=23177498 polypeptide=Lus10025849 locus=Lus10025849.g ID=Lus10025849.BGIv1.0 annot-version=v1.0 ATGGATACCAGATGTCTACCAGCTGCATCATCATGGCTTCTTCTTATGATTATTATCTGCATGCCATTCACAGGTGCTGCTGCTTCCAGAAGGAAATTGG ATGACATAGCCGGCTCTATTGACATAGACTGCGGCTTACCAGCCGGTGAGTCGTATAGAGATTCATCGACCGAGATTCCTTACAGCTCGGATGAATCATT CATCGATACCGGAGTGAACAAAGAGATCTCTACTGTATTCAACTCCGGTCAGCCAACATGGCTACGGACCGTCAGGAGTTTCCCAGAGGGGAACAGAAAC TGTTACAGCTTAAGGCCTCCGGAAGGCAGGGATAAGATATACCTCATCAGGGCCTCCTTCATGTACGGTAACTACGATAATCAGGACAGGCTCCCTGAAT TCGACCTCTACCTCGGAGTTAACCGGTGGAGTTCGTTGAAGTTCGACAATGCTTCCCATGTCCTCAACATGGAAATTATACATGTCCCTTCTCTGGATCA TCTCCACATATGTCTGGTGAATACTGGGTTTGGAACTCCTTTTATATCTGCCTTGGAAGTTAGGCATTTCCACAACTCTACTTATACTTCCCCCTCCCAG AATGCATCTTTAGTCCTTTACCAGCGTCTTGATTTCGGATCCTTAACCAACGACATTATCAGATACAATGATGATGCCTATGATCGGATCTGGTATCCTT ACAACTGCAACATCTGCGGGACAATGAATACTAACCTAACTACTGATTCGGTGAACCAAACCGACTTCAACTTGCCTCCAAAGGTCATGAAAACGGCTTC AGGGCCAAGGGACATGGATGAGCCGTTGAGTTTCGAGCTCAACACCGGAGAGGCGACTGTGGACTTCTCCATTTACATGCATTTCGCAGAGCTAGAGATA CTCAGGGAGGGCGAATCAAGGGTGTTTGATATTTTACTCAATGGAATTGCATTGAGAAGAAATGTCGCACCAAGCTATCTCCACTCAATGACAGTCTCAT CCCCACAACCAGTGAGAGGATCCAAGCTCAGCTTTCTGCTGAGCAAGTCACGGAGTTCTTCACATCCTCCTATTCTCAATGCTCTGGAGGTTTACATTGT CAGTCCATTTTGGCAGAGCCCTACCAATCAGGGAGACGTTGATGCTATTGAGGACATAAAGTCAACATACGGAGTTAAGAAAGGATGGCAAGGAGATCCA TGTGCCCCAGTTCATCCTTGGAATGGTCTCAACTGCATCAACAATGGTTATAGGCCTTACAGAATTATTTCCCTGAATTTATCATCAAGTGGATTAAGAG AGCAAATACCTGTGTCATTGTCGAACCTTGAAATGTTGGAACACCTTGACTTGTCAAACAACAGCATATCAGGAGAAGTGCCCGCCTTTCTGACACAACT AGCACATTTGAGGACTTTGAACCTGAGAGGAAACAGTCTCTCTGGGAAAGTGCCTTCAGCTCTCACCGAAAGATCCAATAATGGCTCACTCATGTTAAGT CTGGATGGAAACCCAAATCTCTGCCTCAAACCTCCTTGCAAGAAAGAGAAGAGTAGCGTTGTAGTTCCTGTCGTAGCCACCATTGTTCCTCTGCTGGCTA TCCTCATTGTATTACTCTTACTTTGGATCTACAAGCGAAATAAAGACAAGAAAGGCAGAAAACCACAGAGAGAAGGATCTGGAATGAAGCTGGATAGCAG GGAATTCACGCACCTGGAGATCGTCAGGATTACAGATAACTTCAGAAGTGTTGCAGGGAAAGGAGGGTTTGGAACAGTTTACCATGGTTACTTGGATGAT GGAACAGAAGTTGCTGTCAAGATGCTATCCCCGTCAGCAACTGAAGGCTCTGCTCAGTTTCAAACTGAGGCTCAGCTACTAACAAGGATTCATCACAAGA ATTTGGCTTCGTTTATCGGATACTGCAATGATGGAACCACTCTTGCAATTTTGTACGAGTACATGGCAGGTGGGAATTTGGAGAAGCATCTGTTAGATCC ATCTAAACCAGTTTTGACTTGGAAAGAGAGGCTTCAGATAGCATTGGATGCTGGCCAAGGCCTGGAATACCTCCATCTTGGTTGCAAACCACCAATAATC CACAGAGATGTAAAAAGCTCCAACATTCTGCTGAGCGAGAAAATGCAGGCGAAGATTGCAGATTTTGGTCTGTCAAAACTTTTCCCCGTTGAAAGCAAGA GCCATTTATCCACATCGGTTGTTGGCACCGTTGGTTACCTTGATCCTGAGTACTACACATCAAACAGGCTCACAGAGAAAAGCGATGTATACAGCTTCGG GATTGTTCTCCTGGAGTTGATCACTGGACGGCCTGCAATAACAGTTGGACACAATGACAACACCCATATTGCCCAGTGGGCAAGGCCCCTGATTGCGGCA GGCGACCTGAGGAATTTGGTTGATCCGAGGCTAGTTGGGAATTTTGATACAAATTCCGCCTGGAAATTCCTGGAGGTGGCAATCTCTTGCATCCGATCCA TTTCCATCCAGAGGCCAAGTATGAACCATGTGGTTGCTGAACTTAAGGAATGCCTTGAAACAGAAATTGCCAATGAGTCTCAACATTGGGAAGAAGGGAA CCTGGACGATGGAACTTATTCTATTGAAATCAATAATACCAAAGCCTTTGAAGTAGGACAAGGTCCTCAAGCGAGGTAG
AA sequence Show only first row Show all	>Lus10025849 pacid=23177498 polypeptide=Lus10025849 locus=Lus10025849.g ID=Lus10025849.BGIv1.0 annot-version=v1.0 MDTRCLPAASSWLLLMIIICMPFTGAAASRRKLDDIAGSIDIDCGLPAGESYRDSSTEIPYSSDESFIDTGVNKEISTVFNSGQPTWLRTVRSFPEGNRN CYSLRPPEGRDKIYLIRASFMYGNYDNQDRLPEFDLYLGVNRWSSLKFDNASHVLNMEIIHVPSLDHLHICLVNTGFGTPFISALEVRHFHNSTYTSPSQ NASLVLYQRLDFGSLTNDIIRYNDDAYDRIWYPYNCNICGTMNTNLTTDSVNQTDFNLPPKVMKTASGPRDMDEPLSFELNTGEATVDFSIYMHFAELEI LREGESRVFDILLNGIALRRNVAPSYLHSMTVSSPQPVRGSKLSFLLSKSRSSSHPPILNALEVYIVSPFWQSPTNQGDVDAIEDIKSTYGVKKGWQGDP CAPVHPWNGLNCINNGYRPYRIISLNLSSSGLREQIPVSLSNLEMLEHLDLSNNSISGEVPAFLTQLAHLRTLNLRGNSLSGKVPSALTERSNNGSLMLS LDGNPNLCLKPPCKKEKSSVVVPVVATIVPLLAILIVLLLLWIYKRNKDKKGRKPQREGSGMKLDSREFTHLEIVRITDNFRSVAGKGGFGTVYHGYLDD GTEVAVKMLSPSATEGSAQFQTEAQLLTRIHHKNLASFIGYCNDGTTLAILYEYMAGGNLEKHLLDPSKPVLTWKERLQIALDAGQGLEYLHLGCKPPII HRDVKSSNILLSEKMQAKIADFGLSKLFPVESKSHLSTSVVGTVGYLDPEYYTSNRLTEKSDVYSFGIVLLELITGRPAITVGHNDNTHIAQWARPLIAA GDLRNLVDPRLVGNFDTNSAWKFLEVAISCIRSISIQRPSMNHVVAELKECLETEIANESQHWEEGNLDDGTYSIEINNTKAFEVGQGPQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	2.0	0.9546
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	3.5	0.9589
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	3.5	0.9537
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	5.9	0.9347
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	6.3	0.9398
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	6.6	0.9323
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	7.3	0.9328
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	7.5	0.9338
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	8.0	0.9420
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	9.5	0.9279

Compare expression of checked genes

Lus10025849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.