Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025850 pacid=23177578 polypeptide=Lus10025850 locus=Lus10025850.g ID=Lus10025850.BGIv1.0 annot-version=v1.0 ATGGGGAATAGCAGTAACTCCCCTCTGAAAACCCATGTCCTCGTGGGTTTTCTCATTGTGCTAATGACAGTGAGCTCCCCTAACTTGCTGCAATCGTCCC AAGCTTCTCGCGAACGAGGGCTTCTACAGAGTGCGAATGCGATAACGCGACCGATATGTCCAGCTTGTGTATGTTGCACACCTCCTCCGCCAGGCTCCTG CTGTGGTCGTTGCTGTGCTTCTCCAATTCACACTGCAGCAGATGGTTTCAGTGCTCTCTTATTCAATCTGCCAACAGATGGTTCGAAAGATGAAAACATC ATCATGAACTCTTTATCTGAAGACCGGGCATGGACTCGGGTTGGACCCTGGGACTTTACCCGGTTACAATTGGCTATTTTCCGTAGCGATTCGTTCGGAG AAGAAGCCATTGAAGGGACCCCAACTGTTATGACGAGGTCCATTACTGCCGTGTACACTCTCCCGAACCCTCCCACTCCATCCACGTCAATTCCCCCCGA GGAGTGCGAGTTTTTGTATAATGGGAGCCAATTGAGGGGGAGTTTCTCATTCGGCAAACAGGATTAA
AA sequence Show only first row Show all	>Lus10025850 pacid=23177578 polypeptide=Lus10025850 locus=Lus10025850.g ID=Lus10025850.BGIv1.0 annot-version=v1.0 MGNSSNSPLKTHVLVGFLIVLMTVSSPNLLQSSQASRERGLLQSANAITRPICPACVCCTPPPPGSCCGRCCASPIHTAADGFSALLFNLPTDGSKDENI IMNSLSEDRAWTRVGPWDFTRLQLAIFRSDSFGEEAIEGTPTVMTRSITAVYTLPNPPTPSTSIPPEECEFLYNGSQLRGSFSFGKQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025850 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	1.4	0.8062
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	1.7	0.8136
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	4.6	0.7647
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	6.3	0.7417
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	12.7	0.7267
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	15.9	0.7447
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	26.1	0.6833
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	30.2	0.6916
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	31.9	0.6909
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	32.9	0.6837

Compare expression of checked genes

Lus10025850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.