Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) AT4G22310 72 / 7e-18 Uncharacterised protein family (UPF0041) (.1) AT4G14695 71 / 3e-17 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT4G05590 69 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038250 [exp] 221 / 1e-76 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10023745 [exp] 73 / 5e-18 AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) Lus10032564 [exp] 73 / 5e-18 AT4G22310 163 / 5e-54 Uncharacterised protein family (UPF0041) (.1) Lus10011790 [exp] 73 / 6e-18 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095133 [exp] 191 / 9e-65 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.015G092500 [exp] 180 / 1e-60 AT5G20090 189 / 7e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.001G333902 [exp] 145 / 1e-46 AT5G20090 144 / 5e-46 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.011G023100 [exp] 69 / 1e-16 AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03650 [flax] [poplar] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Lus10025851 pacid=23177657 polypeptide=Lus10025851 locus=Lus10025851.g ID=Lus10025851.BGIv1.0 annot-version=v1.0 ATGGCTGCCCTGAAATCTTTCTGGAACAGTCCTGTTGGTCCCAAGACAACACACTTTTGGGGACCTATTGCAAACTGGGGATTTGTTGCTGCTGGTTTGG TAGACATGCAAAAACCCCCAGAGATGATCTCCGGAAATATGACTGGAGTGATGTGTGTTTATTCAGCGTTATTTATGAGGTTTGCATGGATGGTGAAACC GCGTAACTACCTCCTTTTAGCATGTCATGCTTCAAATGAGGGTGTCCAACTCTATCAATTTTCACGTTGGGCAAGAGCTCAGGGGTACTTGTCTGAGGAG AAAAAAGAGGTGGCCTAA
AA sequence Show only first row Show all	>Lus10025851 pacid=23177657 polypeptide=Lus10025851 locus=Lus10025851.g ID=Lus10025851.BGIv1.0 annot-version=v1.0 MAALKSFWNSPVGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMTGVMCVYSALFMRFAWMVKPRNYLLLACHASNEGVQLYQFSRWARAQGYLSEE KKEVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	0	1
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	1.0	0.9354
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	2.8	0.9276
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	3.9	0.9223
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	5.7	0.9222
AT3G48140			B12D protein (.1)		Lus10004241 [exp]	6.3	0.9211
					Lus10001241 [exp]	6.3	0.9136
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10019370 [exp]	7.1	0.8839
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10026704 [exp]	8.4	0.9090
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	8.5	0.9054
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	8.9	0.9038

Compare expression of checked genes

Lus10025851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.