Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17020 1882 / 0 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) AT3G03110 1787 / 0 CRM1B, XPO1B exportin 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038248 [exp] 2157 / 0 AT5G17020 1953 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10020393 [exp] 1969 / 0 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10009572 [exp] 1921 / 0 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10037671 [exp] 53 / 1e-06 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Lus10001714 [exp] 45 / 0.0004 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10033845 [exp] 44 / 0.0006 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088600 [exp] 1973 / 0 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.019G052100 [exp] 1965 / 0 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein CL0020 [flax] [poplar] TPR PF08767 [flax] [poplar] CRM1_C CRM1 C terminal CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025853 pacid=23177475 polypeptide=Lus10025853 locus=Lus10025853.g ID=Lus10025853.BGIv1.0 annot-version=v1.0 ATGACGTCCCTCGCTATGGCCGCCGAGAGGCTCCGGGATTTGTCTCAACCAATTGATGTCTCCTTGCTCGATGCCACCGTTGCTGCTTTCTACCGCACCG GATCTAAGGAGGAGAGGGCAGCTGCAGATAAGATTTTGCAAGAATTGCAAAGCAATCAGGATATGTGGCTTCAAGTGGTGCACATTTTGCAGAGCACAAA GAATCTAGATACCAAATTCTTTGCATTGCAGGTCCTAGAGGGTGTCATAAAGTACCGATGGAACGCCTTGCCTGCAGAGCAACGGGATGGAATGAAGAAT TACATATCTGAAGTCATTGTGCAGCTTTCAAGTGATGAGGCTTCTTTTCGTCAAGAGAGGTTGTATGTGAACAAGCTCAATGTCATTTTAGTACAGATTT TGAAGCATGAGTGGCCATCTAAATGGCGGAGTTTTATTCCTGATCTTGTTGCAGCAGCAAAAACCAGTGAAACGATTTGTGAGAATTGCATGGTCATCTT GAAACTTCTGAGTGAAGAAGTCTTTGATTTCTCTAGAGGAAAGATGACTCAACAAAAGATAAAGGAACTAAAACAATCGTTGAACAGTGAGTTTCAACTC ATTCACGAGTTGTGCTTATATGTACTGTCCGTATCTCAAAGAACAGAGCTGATTCGAGCTACGTTGTCCACTTTACATGCTTTTCTCTCATGGATTCCAT TGGGCTATATTTTCGAGTCCCCATTGCTTGAAACACTTCTGAAGTTTTTCCCAATGCCATCATATAGAAATTTGGCCGTTCAATGTCTGACTGAGGTTGC TGCTCTTAGTTTTGGTGACTTCTACAATCCGCAGTATATCAAGATGTACAACATTTTTATGGTCCAGTTGCAGGCCATACTGCCTCCGGCCACAAATATT CCAGATGCATATGGTAATGGGTCTAGTGAGGAGCAGGCATTTATTCAGAATTTGGCTCTGTTTTTCACATCCTTCTACAAGGCAAGTTTCCTCTCTAGAT TTTCTTTGCACATTGCTGATGTTCATATTCGGATACTGGAGTCTAGTCAGGAAAACGTGTCAGCTCTTCTGATGGGTCTTGAATATCTTATTAACATTTC ATATGTTGACGATACTGAGGTTTTCAAGGTTTGTTTGGATTATTGGAACTCTCTGGTCTCCCAGCTCTTCGAGGCTCATCACAATCTGGACAATCCTGCA GCAACTGCAAACATGATGGGGCTGCAGATGCCTTTGCTTCATGGTCTAGTTGATGGCATAGGCTCTCAGATTATGCAGCGGAGGGAGCTGTATGCTGGTA CAATGTCAAACCTGCGAATGCTTATGATATGTCGTATGGCTAAACCGGAAGAGGTTCTCATAGTTGAAGATGAAAATGGGAATATTGTTCGCGAAACCAT GAAAGACAATGATGTGCTTGTCCAATACAAGATGTTGAGAAAGTTGAGCAAACAACTAACTGGGGAGGATTGGAGTTGGAACAACTTAAACACTCTATGT TGGGCCATTGGATCCATCTCTGGTTCCATGATGGAAGAACAGGAAAACAGATTTCTGGTTATGGTCATCCGTGACTTGTTGAATTTGTGTGAAATCACAA AAGGAAAAGACAACAAAGCTGTTATCGCCAGTAATATTATGTATGTTGTTGGGCAGTATCCCAGATTTCTTCGTGCTCATTGGAAGTTTCTGAAAACTGT TGTCAATAAACTGTTCGAGTTCATGCACGAGACTCATCCAGGAGTTCAGGATATGGCTTGTGATACCTTTCTGAAAATTGTTCAAAAATGCAAGCGGAAG TTCGTTATTGTTCAGGTTGGAGAAAGTGAGCCATTTGTATCTGAACTTTTGACTGGCCTAGCAGCCACTGTTGGTGATCTCGAACCTCATCAAATTCATA CGTTCTATGAATCTGTTGGACAAATGATTCAAGCAGAATCTGATCCTCAGAAGAGAGATGAATACTTGCAGCGACTAATGAAGCTTCCAAACGAGAGATG GGCGGAGATTATAGCACAAGCTCGTCAGAGTGTTGATTTTTTGAAAGATCAAGATGTCATTCGAACTGTGCTTAATATATTACAGACAAATACAAGTGTT GCAACTTCTCTTGGGACTTACTTCTTACCCCAAATAACGTTGATCTTTCTGGATATGCTTAATGTATACAGAATGTATAGTGAACTTATATCAAGTAACA TTGCAAATGGAGGACCGTACGCATCACGGACATCATATGTTAAATTATTAAGGTCTGTTAAGAGGGAGACACTGAAGCTCATTGAGACCTTTTTGGACAA GGCTGAGGACCAGCCACAAATTGGGAAACAATTTGTGCCCCCAATGATGGATCCTGTTCTTGGGGATTATGCTAGGAATTTGCCTGATGCTAGAGAATCC GAAGTTCTCTCACTATTTGCAACAATTATAAACAAGTACAAAGCTACAATGATAGATGACGTTCCACGCATTTTTGAAGCTGTTTTTCAGTGTACTTTGG AGATGATTACAAAAAATTTTGAAGACTACCCGGAGCATCGCCTCAAGTTCTTTTCACTACTACGTGCAATTGCAACCCATTGCTTCCCTGCTTTGATCCA TTTGTCCAGTCCGCAACTAAAGCTTGTAATGGATTCAATCATATGGGCTTTCCGGCATACTGAAAGGAATATAGCTGAGACGGGGCTGAACTTGTTATTA GAGATGTTGAGGAACTTCCAGATGTCTGAGTTCTGTAATCAGTTCTACCAGACCTACTTTGTGACGATCGAGCAAGAGATTTTTGCAGTGCTGACGGACA CATTTCATAAACCTGGGTTCAAGTTGCATGTCTTAGTGCTACAGAACTTGTTCTGCCTGGTTGAGAGTGGTGAACTAACAGAGCCTTTGTGGGATGCTGC AACAGTTCCTTATCCATATCCTAACAATGCCATGTTTGTCAGAGAGTATACTATCAAGCTTCTGGGAACTTCGTTCCCCAACATGACTGCGGCAGAGGTC GGTCAATTTGTGAATGGGTTATTTGAGTCGAGAATGGACTTGTCTGGATTTAAAGATCGGATAAGAGACTTCCTTGTGCAATCAAAAGAGTTTTCAGCTC AGGACAATAAGGATCTTTATGCTGAAGAGGCTGCTGCTCAGAGAGAAAGGGAGAGACAGCGAATGCTATCTATTCCGGGGCTTATCGCCCCTAACGAGAT ACAAGACGAGATGTTGGATTCGTAG
AA sequence Show only first row Show all	>Lus10025853 pacid=23177475 polypeptide=Lus10025853 locus=Lus10025853.g ID=Lus10025853.BGIv1.0 annot-version=v1.0 MTSLAMAAERLRDLSQPIDVSLLDATVAAFYRTGSKEERAAADKILQELQSNQDMWLQVVHILQSTKNLDTKFFALQVLEGVIKYRWNALPAEQRDGMKN YISEVIVQLSSDEASFRQERLYVNKLNVILVQILKHEWPSKWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGKMTQQKIKELKQSLNSEFQL IHELCLYVLSVSQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLAVQCLTEVAALSFGDFYNPQYIKMYNIFMVQLQAILPPATNI PDAYGNGSSEEQAFIQNLALFFTSFYKASFLSRFSLHIADVHIRILESSQENVSALLMGLEYLINISYVDDTEVFKVCLDYWNSLVSQLFEAHHNLDNPA ATANMMGLQMPLLHGLVDGIGSQIMQRRELYAGTMSNLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKMLRKLSKQLTGEDWSWNNLNTLC WAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRK FVIVQVGESEPFVSELLTGLAATVGDLEPHQIHTFYESVGQMIQAESDPQKRDEYLQRLMKLPNERWAEIIAQARQSVDFLKDQDVIRTVLNILQTNTSV ATSLGTYFLPQITLIFLDMLNVYRMYSELISSNIANGGPYASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNLPDARES EVLSLFATIINKYKATMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIHLSSPQLKLVMDSIIWAFRHTERNIAETGLNLLL EMLRNFQMSEFCNQFYQTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQNLFCLVESGELTEPLWDAATVPYPYPNNAMFVREYTIKLLGTSFPNMTAAEV GQFVNGLFESRMDLSGFKDRIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	0	1
AT1G27595			unknown protein		Lus10007230 [exp]	1.4	0.9559
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	1.7	0.9404
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	3.5	0.9235
AT1G27595			unknown protein		Lus10028229 [exp]	3.9	0.9396
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	4.8	0.9120
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	4.9	0.9331
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	5.2	0.9308
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	5.5	0.9375
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	6.2	0.9425
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	7.5	0.9342

Compare expression of checked genes

Lus10025853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.