Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 504 / 4e-177 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT5G17030 461 / 5e-160 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT5G17040 440 / 3e-152 UDP-Glycosyltransferase superfamily protein (.1) AT1G30530 418 / 2e-143 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT1G22360 189 / 2e-54 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 187 / 1e-53 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 182 / 1e-51 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 180 / 2e-51 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT5G59590 177 / 3e-50 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT1G22370 177 / 7e-50 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038246 [exp] 318 / 3e-107 AT5G17050 182 / 9e-55 UDP-glucosyl transferase 78D2 (.1) Lus10025741 [exp] 180 / 4e-51 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 180 / 4e-51 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 178 / 3e-50 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10040725 [exp] 172 / 2e-48 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10010665 [exp] 172 / 7e-48 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 170 / 2e-47 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 169 / 2e-47 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 169 / 9e-47 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118700 [exp] 526 / 0 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 506 / 6e-178 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 388 / 1e-131 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.006G171100 [exp] 365 / 8e-123 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 360 / 9e-121 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 338 / 9e-112 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 328 / 4e-108 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 303 / 9e-100 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 234 / 2e-74 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.005G073766 [exp] 187 / 8e-54 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025854 pacid=23177562 polypeptide=Lus10025854 locus=Lus10025854.g ID=Lus10025854.BGIv1.0 annot-version=v1.0 ATGCCTCCGCCGGCAACCACCCCCGACGGGCCTCACGTCGTAGTGCTGTCATTCCCATTCGGCACCCACGCCGCGCCTCTCCTGGCGGTGGTGAAGCGGC TGGCAGCCCTGTCTCCGGCGACGCATTTCTCCTTCTTTGGCACCGAGCAATCCAACGCCTCCGCCTTCAAGAACCAAGCCGCCGCCGTATCGGAATCACC CAACCTCCGGGCCCACATGGTGTGGAACGGGATCCCGGAGGGGTACGAGTTGACGGGGAGGCCTCAGGAGGCGATCGAGATGTTCATGAAGGCGGCTCCG GGGGAATTCAGGAAAGGGATTGAGGCGGCGGTGGAGGAGTCAGGGCGGAAAGTGAGCTGGCTGGTGACGGATGCGTTCTACTGGTTCGCGTCGGAGATGG GGATACCGTGGATTGCATTCTGGACAGCTGGCCCCAATTCGCTTTCAGCGCATCTCCACACCGATCCTCTGAGGGAAGCGCTTGGTAGTGTTCCAGATGC AGTAGTTGGGCGTGAGGAGGAAACCTTGAAGGGGATAGTAGCAGGAATGTCAAAGCTGAGATTCCGCGACCTGCCGGAAGGAGTAGTGAAGGGCAACTTA CAATCCATCTTCTCCACAATGCTCCACAACATGGCTACTCATCTACCCAAAGCAGCTGCCGTATTCATCAACTCGTTCCACGCCCTTGATCCAACCATCA CCGATGACTTGTCTTCCAAGCTAAACAACTTTCTCAACATCGGCCCTTTCCATCTCCTCTACCCATCCCCGGCCAGCAAGGAACAACAACAGCAACCATC CGATTGTATCTCATGGCTCAACGACCAACGGCACCTACCGGCATCAGTCGCCTACTTGAGCTTCGGGTCAGTGGTGACGCCCCCACCACACGAGCTGGCC GCGGTGGCAGAGGCGTTGGAAGCTAGCAAAGTGCCCTTCATATGGTCACTTAAGGAACATTCCAAGGCTCATCTTCCAGATGGGTTTCTAGATTGGAGCA AAGGGAATGGGGTTGTGGTGCCATGGGCTCCTCAGATGGAGGTTTTGGGGCATCAAGCTGTGGGTGTTTTCATCACTCACTGCGGATGGAACTCGGTGCT GGAGAGCATTGCAGGAGGGGTGCCCATGATCTGCAGGCCGTTTTTCGGCGACCAGATAATCAACAGTCAGATGGTGGAGAAAGTATGGGAGATCGGTGTG AACTTGGAAGGCGGAGCGTTCACCAAGAGTGGGCTGGTAAGTTGTTTGGATAGGGTGCTAAGGCAAGAAGAAGGGAAGAAGGTGAGGGTCAACACTCGAC ACCTTAGGGAGAAAGCTGAGGAAGCAACTCAATCAAAGGGGAGCTCAAGTGCTGATTTCTTCAAATTGGTGGAATTGGTATCAAAGAGCACTTAA
AA sequence Show only first row Show all	>Lus10025854 pacid=23177562 polypeptide=Lus10025854 locus=Lus10025854.g ID=Lus10025854.BGIv1.0 annot-version=v1.0 MPPPATTPDGPHVVVLSFPFGTHAAPLLAVVKRLAALSPATHFSFFGTEQSNASAFKNQAAAVSESPNLRAHMVWNGIPEGYELTGRPQEAIEMFMKAAP GEFRKGIEAAVEESGRKVSWLVTDAFYWFASEMGIPWIAFWTAGPNSLSAHLHTDPLREALGSVPDAVVGREEETLKGIVAGMSKLRFRDLPEGVVKGNL QSIFSTMLHNMATHLPKAAAVFINSFHALDPTITDDLSSKLNNFLNIGPFHLLYPSPASKEQQQQPSDCISWLNDQRHLPASVAYLSFGSVVTPPPHELA AVAEALEASKVPFIWSLKEHSKAHLPDGFLDWSKGNGVVVPWAPQMEVLGHQAVGVFITHCGWNSVLESIAGGVPMICRPFFGDQIINSQMVEKVWEIGV NLEGGAFTKSGLVSCLDRVLRQEEGKKVRVNTRHLREKAEEATQSKGSSSADFFKLVELVSKST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	0	1
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	1.4	0.9765
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	2.0	0.9793
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	3.9	0.9759
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	5.5	0.9704
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	5.7	0.9709
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	5.9	0.9708
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	5.9	0.9684
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	6.9	0.9678
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	9.8	0.9574
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	10.7	0.9557

Compare expression of checked genes

Lus10025854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.