Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19160 304 / 1e-101 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038244 [exp] 518 / 0 AT4G19160 375 / 7e-127 unknown protein Lus10024153 [exp] 44 / 0.0001 ND 49 / 5e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G033300 [exp] 379 / 7e-131 AT4G19160 522 / 0.0 unknown protein Potri.001G193400 [exp] 376 / 8e-130 AT4G19160 516 / 0.0 unknown protein Potri.001G027600 [exp] 44 / 6e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025855 pacid=23177685 polypeptide=Lus10025855 locus=Lus10025855.g ID=Lus10025855.BGIv1.0 annot-version=v1.0 ATGACCAAGGGCTCAGCCCACCTCAAAATGTATCACGAGGTTGCAAAGTCTGCAAGGCATAAGTTCACTCAAGAAGTTTCTTTCCAGCCCAAGGACAAAG ACATCTCTCTTGCAAGGGCTCTGCTATACATTGCAGCTGAGGACGAGGCATTAATAGCTTCCAATCAAGAAGTGGATGTTCAATCATTGCTCAATGAAAG AACGAATGCGTCAATACAATCTCATGTTCCAGACTGGGATAATGTGGAGCATATGCCATTATCTGGGAAGACAATTACGGGATGGCTTGAGGAGTTAGAT CTGATTGCAAAAGAAGTTCAGGCAGAGTTAGTTTCAAGAGAGATCGGCTGCCATCTGGTTGAAGTTTTGGATGCAATAAACTTAGTTCTTTTTGAAAGTA GAGCCTTCAAGAGGTCTTCTGTTACTGATTCCAAGTGTTCATACTTGCACAGCGTTCTGAGCACTGGTTCTGGCAATGCAATTTTGCTTAGCATAATTTA CATTGAAGTTTGTAGACGACTCGGCATAACCATTGTGGGATCTCGGGTTGGGGAAGAGTTTTTAATATGGCCCCAAACAGAGAATCCAGAGGAGCTTTTC AGGGTAACTGAAGGACACAGCATGTTTGCTATTGTTAATGGGAAGTGTGTGGAGGATCCTAGGTCAAGGGCCTCGGATTTAACAAGTGGTTCTCTTTTAG GACTTGAGATTGCTTCAAAGAGAGACATAATCGGGATTGCTTTGGCCAATTTGATTGGAGTACGGGAAGGCGGTGCAAGAGCTGAGTATATGCATGGCAT TTGCACCAGAAGAAGAAGCACAAGTTCTGGAACCCTTTGTGGAGAAGCTGCATCTTTTGCGACTTGA
AA sequence Show only first row Show all	>Lus10025855 pacid=23177685 polypeptide=Lus10025855 locus=Lus10025855.g ID=Lus10025855.BGIv1.0 annot-version=v1.0 MTKGSAHLKMYHEVAKSARHKFTQEVSFQPKDKDISLARALLYIAAEDEALIASNQEVDVQSLLNERTNASIQSHVPDWDNVEHMPLSGKTITGWLEELD LIAKEVQAELVSREIGCHLVEVLDAINLVLFESRAFKRSSVTDSKCSYLHSVLSTGSGNAILLSIIYIEVCRRLGITIVGSRVGEEFLIWPQTENPEELF RVTEGHSMFAIVNGKCVEDPRSRASDLTSGSLLGLEIASKRDIIGIALANLIGVREGGARAEYMHGICTRRRSTSSGTLCGEAASFAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19160			unknown protein		Lus10025855 [exp]	0	1
AT4G19160			unknown protein		Lus10038244 [exp]	1.0	0.9769
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	4.5	0.9621
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	6.0	0.9674
AT2G24550			unknown protein		Lus10026939 [exp]	7.4	0.9597
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	8.5	0.9626
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	9.0	0.9624
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	9.5	0.9630
AT1G20460			unknown protein		Lus10012282 [exp]	9.6	0.9438
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	11.0	0.9488
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	11.2	0.9628

Compare expression of checked genes

Lus10025855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.