Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07510 201 / 4e-66 unknown protein AT2G01580 150 / 4e-46 unknown protein AT5G05950 82 / 8e-20 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 62 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038243 [exp] 243 / 4e-82 AT3G07510 243 / 2e-82 unknown protein Lus10009873 [exp] 78 / 4e-18 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10016474 [exp] 75 / 5e-17 AT5G05950 183 / 3e-59 maternal effect embryo arrest 60 (.1) Lus10040757 [exp] 72 / 5e-15 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10000398 [exp] 47 / 8e-07 AT5G05950 130 / 2e-39 maternal effect embryo arrest 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176000 [exp] 215 / 1e-71 AT3G07510 207 / 2e-68 unknown protein Potri.002G239500 [exp] 209 / 1e-69 AT3G07510 202 / 8e-67 unknown protein Potri.014G176300 [exp] 109 / 3e-30 AT3G07510 144 / 1e-43 unknown protein Potri.014G176400 [exp] 89 / 5e-22 AT3G07510 122 / 1e-34 unknown protein Potri.010G196100 [exp] 85 / 8e-21 AT5G05950 181 / 2e-58 maternal effect embryo arrest 60 (.1) Potri.009G038500 [exp] 75 / 5e-17 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025856 pacid=23177465 polypeptide=Lus10025856 locus=Lus10025856.g ID=Lus10025856.BGIv1.0 annot-version=v1.0 ATGACGACCACCAGAAGGGTACTGTCGTCGTCTTCTTCCGCCGCCGCCACCACCAGCGTCCACGTCACCGCGCTGGACGGCCTGGTCAACGTCAACTCCT TATTCACAATCGCCGTGTTCGTCGGACTGTCATTCACCACCCCTGGTCAACGCAGCCTGGAGAATCGGACTTCGTGCGACGCGGGGATCGAGGAAGCGAA GAAGCTGTTGGTGTTCGAGGTGCTATCCTTCAGCTTTTTCCTATTCTCTTCACTGGTGGCGCAGGGTTTGAAGCTGGCCATCAATTTGCTGAACAGTAAA GACGTGGACGAGGCGTTCAAGGCCCATATCAACATAAAGGTGCTGAGATTCGGGATGATGGGTTCGGCAATTGGGTCGGTTCTGGGGTGCGTGTTCTTGG TGTTGTCGATGGTGAATGTGATTGAGATTCGGCTGGGTTTGTTGTCTTGTGGGAGTAAGAGCGCGATTCATGCTGTTTCGGCGCTGGTTTTGCTGGTATC GTCTGCGCTCTTGTGTTATATATCCACTGCTGTCTATGCTTTCTTGCACTGA
AA sequence Show only first row Show all	>Lus10025856 pacid=23177465 polypeptide=Lus10025856 locus=Lus10025856.g ID=Lus10025856.BGIv1.0 annot-version=v1.0 MTTTRRVLSSSSSAAATTSVHVTALDGLVNVNSLFTIAVFVGLSFTTPGQRSLENRTSCDAGIEEAKKLLVFEVLSFSFFLFSSLVAQGLKLAINLLNSK DVDEAFKAHINIKVLRFGMMGSAIGSVLGCVFLVLSMVNVIEIRLGLLSCGSKSAIHAVSALVLLVSSALLCYISTAVYAFLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07510			unknown protein		Lus10025856 [exp]	0	1
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	7.7	0.7971
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	9.5	0.7503
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	12.7	0.7373
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	15.8	0.7715
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	20.0	0.7793
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	23.4	0.7461
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	23.5	0.7856
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	29.7	0.7702
					Lus10002975 [exp]	30.2	0.7368
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	34.2	0.7737

Compare expression of checked genes

Lus10025856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.