Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22400 784 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 743 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT1G72520 645 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 635 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 579 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 559 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004915 [exp] 764 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10015184 [exp] 762 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 755 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10038242 [exp] 743 / 0 AT1G55020 263 / 2e-78 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 741 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 668 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10015666 [exp] 644 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 637 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 635 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018200 [exp] 1181 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 1157 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032700 [exp] 774 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 771 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 771 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 763 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.013G022000 [exp] 757 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.010G089500 [exp] 753 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032800 [exp] 742 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 738 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10025857 pacid=23177539 polypeptide=Lus10025857 locus=Lus10025857.g ID=Lus10025857.BGIv1.0 annot-version=v1.0 ATGGATCAGATGTTTACCCTAAACCCCAAGCTACGGACATTATGGTTTCTTTGCACCACCACAACACTCAGCATATCATTCAGCTTCTCAGTATCTATAA GAGGGGAAAAGAGGAGCATCATAGGCCACAATCACCTAGGAAGGGGAACAAGTATGGAGCCGTTCCAGCATTCAAGCCCACAAAAGCGAGCAGCAGTCCG TTGCAGAAATCGGCCAGTTTCGCATGTCGCTAGCTCTACCAAGCATTGTGTTGAGGGGAAAGTAGTGATTACTCAGAGCCATGGGCAATCAAGTCCTGGG AAATCAGCATCTCTACAGCTCTATAGCAGCACCAAAGTTAATCCTAGTACAGGCAAAGGGGAGTTGAGCCGACGAGCTTACCTGAGGCATGGAAAGAGCA AGAAGAAAGGAACTATAAGAACAACGTCATATAAGATAAAGCTCTGGGTTGAGCCAGATTTTGGAACTCCAGGAGCCTTCCTTATTGCAAATCGTCACAA GCATAAGTTCTTTCTTGAGTCTGTTACCGTTGAAGTTCTTGGCCAACAACATATCCATTTCAACTGCAGTTCTTGGATATACCCTATGGACAAGACCAAA TCGGAGCGACTTTTCTTCTCAAACACTAGTTACCTCCCAAACCAAACACCTCATGCTTTGGTGGAGTTGAGGAAGTCGGAGCTTCTGAGCTTGAGGGGAG ATGAAACTGGGGAGAGAAAGGAATGGGATAGAATCTATGACTATGATTTCTACAACGATTTAGGTGATCCGGATAAAGGTTGGCTACATGCTAGGCCTGT CATAGGTGGTTGCAGATGGCATCCATACCCTCGTAGGGGAAGAACCGGACGACCACCTAGCAACACAGATCCATTGGCCGAGAGCCAGGCTGAATCAAAA CTGGATATCTACGTGCCATCAGATGAGCAGTTTAGCCCGACAAAACTATCAGAGTTCGTCTCAAACTCGATTGGTGCTACAGTACATTTTCTTGTCTCGG AAGCAAAAGCCTTGCCGAAAAATGATTCTAGTAACTTTAAGTCATTTGACGGCTTACGTGAACTGTTTGCTGGCAAGCGAAGTCAGGCTGTAGAGAAACA GGTTAGAGAGAAACTAAAGAAATTAGTACCAGAGGATCTTTTCAAAGAGATTATTCACAGGAGCAAAGAAGAGGCGGCCAAATTTCCACTACCACAAATT ATAGCAGAGAACGAGGTGGCCTGGATGGATGACGCGGAGTTTGCAAGACAAATGCTTGCAGGAGTAAATCCAACAAGAATACAGTGTTTGCAGGAATTCC CTCCAAAAGGAAAACACTCAGTGAGCACAATCAAGGCATCAGACATCGCAAATAACCTTGACGGTCTGAATCTTATCGAGGCAATGGAGCAATGGAGGAT ATTCATATTGGATCATCATGATTACCTCATGCCCTTTTTGAGTAGAATAAATGCTGAGGGTACTGTTTGTGCTTATGCATCACGAACCTTATTATTCTTA AGAAGTGATGCCACACTGAAGCCACTAGTAATAGAACTGAGCTTGCCTGGATTCTCCAGAGGGACCTCCACGAGCAGAATAATCCGTCCAGCCACTCAAG GCACTGAAGCAGCACTCTGGCATCTTGCTAAGGCTCATGTTACAGCCAATGACTCAGCTTATCACCAACTAGTCAGCCATTGGTTGCACACTCATGCAAT TATTGAGCCATTCATCATTGCATCCAGAAGGCAGTTGAGTGCTCTGCATCCAATTCACCGGCTATTGCATCCACATTTCAAAGACACCATGCACACAAAT GCATTAGCAAGAAATTTCCTTATAAACTCGGGTGGAATCCTTGAACAAACACTATTTACTGGTGAAATGTCTATGGAGTTGTCTTCCGAGCTTTATAAAG ATTGGAAATTCGATGAACAAGCTCTACCGGCTGATCTACTGAAAAGAAGGCTAGCCCTACAAAACCCCGACTGTCCCTCTGGAGTTGAGCTTCTCTTCCC CGATTATCCCTATGCTGCAGACGGACTTGACATATGGGACGCTATCAAAACATGGGTCACAGACTTCTGCGCAGTTTTCTACAAAGATGATAATTCGATA ATGTCTGACGTAGAAATTCAAGCATGGTGGTCAGAAATCAGAAACGTTGGTCATGGTGACAAGTCCCAGGAGATATGGTGGTATAAAATGACAACTATCT CAGATCTAATAGAGGCTTTAACAACTCTGATATGGATTGCTTCTGCTTTTCATGCTTCTTTGAATTTTGGGCAGTATGCATATGCTGGCTACCCTCCAAA TCGGCCAACTCTATGTCGAAAGTTCATCCCAAAGGAAGGGACGCACACATTTGCCGAGTTCCTAGGAGATCCTGATAAATTTTATCTGGAAATGTTGCCA GACAGATATCAGATGACACTTGGTCTAGCATTAACAGAAGTCCTATCACGACATACATCAGATGAGGTGTACTTAGGACAAAGGCCCATAAACTGGACTG ACAACAAGGAAGTGGAACAGAAGCTAAACAAATTCAAAGATACTCTTCGAGAATTAGAGAAGAACATAATTGAAAGAAACAGAAATCCAGAGTTGAAGAA CAGATCTGGACCTTCGAAGATCCCGTACAGATTGCTTTACCCAGGAGCATTTGATATGGGATTCAAAGGGGGTTTTGGTGCCACAGGAATTCCTAATAGC ATATCGCTTTAA
AA sequence Show only first row Show all	>Lus10025857 pacid=23177539 polypeptide=Lus10025857 locus=Lus10025857.g ID=Lus10025857.BGIv1.0 annot-version=v1.0 MDQMFTLNPKLRTLWFLCTTTTLSISFSFSVSIRGEKRSIIGHNHLGRGTSMEPFQHSSPQKRAAVRCRNRPVSHVASSTKHCVEGKVVITQSHGQSSPG KSASLQLYSSTKVNPSTGKGELSRRAYLRHGKSKKKGTIRTTSYKIKLWVEPDFGTPGAFLIANRHKHKFFLESVTVEVLGQQHIHFNCSSWIYPMDKTK SERLFFSNTSYLPNQTPHALVELRKSELLSLRGDETGERKEWDRIYDYDFYNDLGDPDKGWLHARPVIGGCRWHPYPRRGRTGRPPSNTDPLAESQAESK LDIYVPSDEQFSPTKLSEFVSNSIGATVHFLVSEAKALPKNDSSNFKSFDGLRELFAGKRSQAVEKQVREKLKKLVPEDLFKEIIHRSKEEAAKFPLPQI IAENEVAWMDDAEFARQMLAGVNPTRIQCLQEFPPKGKHSVSTIKASDIANNLDGLNLIEAMEQWRIFILDHHDYLMPFLSRINAEGTVCAYASRTLLFL RSDATLKPLVIELSLPGFSRGTSTSRIIRPATQGTEAALWHLAKAHVTANDSAYHQLVSHWLHTHAIIEPFIIASRRQLSALHPIHRLLHPHFKDTMHTN ALARNFLINSGGILEQTLFTGEMSMELSSELYKDWKFDEQALPADLLKRRLALQNPDCPSGVELLFPDYPYAADGLDIWDAIKTWVTDFCAVFYKDDNSI MSDVEIQAWWSEIRNVGHGDKSQEIWWYKMTTISDLIEALTTLIWIASAFHASLNFGQYAYAGYPPNRPTLCRKFIPKEGTHTFAEFLGDPDKFYLEMLP DRYQMTLGLALTEVLSRHTSDEVYLGQRPINWTDNKEVEQKLNKFKDTLRELEKNIIERNRNPELKNRSGPSKIPYRLLYPGAFDMGFKGGFGATGIPNS ISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	1.0	0.9744
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	2.0	0.9676
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	3.5	0.9548
AT1G67790			unknown protein		Lus10034566 [exp]	3.5	0.9629
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	4.5	0.9456
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	6.0	0.9423
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	6.0	0.9202
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	6.5	0.9082
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	7.5	0.9221
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	8.1	0.9139

Compare expression of checked genes

Lus10025857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.