Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48440 486 / 2e-169 FAD-dependent oxidoreductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038241 [exp] 906 / 0 AT5G48440 504 / 9e-177 FAD-dependent oxidoreductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018300 [exp] 580 / 0 AT5G48440 531 / 0.0 FAD-dependent oxidoreductase family protein (.1.2) Potri.014G177300 [exp] 537 / 0 AT5G48440 511 / 2e-179 FAD-dependent oxidoreductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10025858 pacid=23177463 polypeptide=Lus10025858 locus=Lus10025858.g ID=Lus10025858.BGIv1.0 annot-version=v1.0 ATGGCTTCGTCTCTCTCGTTTCTCTCATGGACAGTTTCTTCTCCCTGCAACCGCGACCTTGTTTCTTTTCAACGCAGTTTCCCTACCTTGCTCAGCAGCT GTACGGAATCCACCTTATTCGGCTCCAAACTGGCCGCCACGCAGCTTTCCTGCTCCTCGACGCCGCACCGCCTCCGTTGCCGGGTTTTACATGCGGAACG CGCCACTTCCGCTGCTTTTCAAACCTTCGATGTTGTTGTCATTGGGGCCGGAATCATCGGATTGACGATCGCTCGCCAGCTCTTGATTAGCTCCGACCTC TCCGTCGCCGTCGTCGATAAAGCTGTTCCGTGCTCCGGTGCTACCGGCGCAGGGCAGGGTTACCTGTGGAAGGTGCACCTTACGCCTGAGGATGAGACGT GGGAGCTCGTAACCAGAAGCCATCAACTGTGGGAGATGTTTTCCGACAGTGTGAGTGATCAAGGCTTGAGTCCTATCGACGAGCTCGGCTGGAAAAGGAC TGGAAGTTTGTTAGTTGGTAGAACCCCTAAAGAGACAGAGATGTTGAAAAGGAAGGTGAAACAGCTGTCTGCAGCTGGGGTGAAAGCTGAGTACCTATCC AGTTATGAGTTGAGCATTGAGGAACCTGACCTAGTAGTTGGAGAGGATGGCGGGGCTGCTTTTCTACCAGATGATTGTCAACTGGATGCATATCGTACCG TCTCATACATACAAAAGGCTAATAAAGAATTTGCATCGGAAGGGAGATACGCAGAATTCTTTCATGAGCAAGTGACAGGCTTGTTGAGCTCTAGTGGAAG TGGAGAGATTGATGGTGTTCAGACCTCAAGTGGTGCATTTATCAGTAAGAAGGCCATTATAGTTGCAGCTGGTTCATGGACTGGCTCTTTGACCCATGAA TTATTTAGAGATTCAGATATTACATTAAATATTCCCATCAAGCCCAGAAAGGGCCACTTGCTTGTGCTGGAGAACTTTAATGACCTTAAATTGAATCATG GCACAATGGAAGTTGGCTATGTTGGCCATAAAGATGCAGCAGTAAAACATGAAAAATCAGATTTAGAACCACTGGATCATGATCAATCATTGTTTGTCGC AATGGGAGCCACTACTGATGCTATGGGAAACCTTGTTCTTGGAAGCAGCCGTGAGTTTGCTGGATTCAACACTGAACTGGAAGAGTATGTTATAAATCGT ATATGGAATAGAGCTGGAGAGTTCTTCCCTAAGTTGAAGGGGAAGTCCCTCGGGGATCTCACGGCGGACAGAAAAGTGAGGATAGGCTTACGCCCTTTCA TGCCTGACGGGAAACCAGTGATAGGGTCAGTGCCCAATATGTCGAATATTTTCATTGTTGCTGGGCATGAAGGTGGAGGACTTTCAATGGCTTTGGGAAC CGCAGAACTGGTAGCAGATATGGTAACAGGCAAGCCCGTAAGTGTTGATTCTGCCAAATTTGCTGTCCAAGGACGATGTTGA
AA sequence Show only first row Show all	>Lus10025858 pacid=23177463 polypeptide=Lus10025858 locus=Lus10025858.g ID=Lus10025858.BGIv1.0 annot-version=v1.0 MASSLSFLSWTVSSPCNRDLVSFQRSFPTLLSSCTESTLFGSKLAATQLSCSSTPHRLRCRVLHAERATSAAFQTFDVVVIGAGIIGLTIARQLLISSDL SVAVVDKAVPCSGATGAGQGYLWKVHLTPEDETWELVTRSHQLWEMFSDSVSDQGLSPIDELGWKRTGSLLVGRTPKETEMLKRKVKQLSAAGVKAEYLS SYELSIEEPDLVVGEDGGAAFLPDDCQLDAYRTVSYIQKANKEFASEGRYAEFFHEQVTGLLSSSGSGEIDGVQTSSGAFISKKAIIVAAGSWTGSLTHE LFRDSDITLNIPIKPRKGHLLVLENFNDLKLNHGTMEVGYVGHKDAAVKHEKSDLEPLDHDQSLFVAMGATTDAMGNLVLGSSREFAGFNTELEEYVINR IWNRAGEFFPKLKGKSLGDLTADRKVRIGLRPFMPDGKPVIGSVPNMSNIFIVAGHEGGGLSMALGTAELVADMVTGKPVSVDSAKFAVQGRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48440			FAD-dependent oxidoreductase f...		Lus10025858 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	23.8	0.6615
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10010818 [exp]	38.6	0.6456
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	61.0	0.6394
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	80.3	0.6377
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038671 [exp]	85.9	0.6174
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	95.5	0.6191
AT3G45850			P-loop containing nucleoside t...		Lus10025275 [exp]	103.8	0.6150
					Lus10018645 [exp]	116.4	0.6179
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	118.1	0.6172
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	121.0	0.5923

Compare expression of checked genes

Lus10025858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.