Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 695 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 664 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT5G09640 347 / 7e-115 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT3G12203 338 / 7e-112 SCPL17 serine carboxypeptidase-like 17 (.1) AT2G22990 333 / 3e-110 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT1G73300 325 / 6e-107 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73290 324 / 1e-106 SCPL5 serine carboxypeptidase-like 5 (.1) AT2G22980 324 / 1e-106 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT1G73280 323 / 5e-106 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73270 323 / 6e-106 SCPL6 serine carboxypeptidase-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038240 [exp] 984 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 775 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 772 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 635 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 592 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 582 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 551 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 360 / 6e-120 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 355 / 1e-108 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 803 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 645 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 357 / 4e-119 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 354 / 8e-118 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 345 / 3e-114 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 344 / 1e-113 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 326 / 1e-106 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 322 / 3e-106 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 303 / 8e-98 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.018G103100 [exp] 280 / 6e-89 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10025859 pacid=23177648 polypeptide=Lus10025859 locus=Lus10025859.g ID=Lus10025859.BGIv1.0 annot-version=v1.0 ATGGCGCCTTTCTCATACATTTTAGTATTTGCCCTGCTGAGCTTTGGAGCGTTACTGGCTCACTCTGCTCCTGAAAATGCTCTCGTCACTCAGCTTCCTG GCTTCTCTGGCTCTTTCCCTTCCAAGCACTACTCTGGGTATGTAACGATCAACGAGGGCACTGGGAAGAAATTGTTCTACTATTTGGTCCAATCGCAGGG GAACCCATCAAAGGATCCTCTTGTGCTTTGGCTTAATGGTGGCCCTGGTTGCTCCAGCTTCGATGGATTCGTCTATGAGCATGGTCCTTTCAATTTTGAA AAGACTAAGGAAGGTCTACCCATATTGCATCTGAACCCATATAGTTGGTCAAAGGTTTCAAGCGTTCTATACGTAGACTCTCCAGCTGGCGTTGGGTTTT CTTATGCGGAGAACACATCAGAATATGAGACTGGGGATCTAAAGACTGCCACAGATTCCCACGACTTTCTCTTGAAGTGGTTTGAGCTATACCCGGAGTT CCTATCAAACCCATTTTTCATTTCTGGAGAGTCATATGCTGGAGTTTATGTCCCAACTCTTGCTTATGAAGTTGCCAAAGGGATCGATTCTGGTGTCAAA CCTGTTATTAATCTCAAGGGCTATATGGTTGGAAATGGAGTTACTGATGATGTGTTTGATGGAAATGCACTTGTTCCATTTGCACATGGGATGGGCCTCA TTTCTGATGACCTATATCAGGAGGTCACCCAAGAATGCAAGGGAAATTTCTACAACCCGCTGGAGGAAAATTGTGAGCAGAAACTGATAGAAGTCGATAG GGAAGTTTCTGGTCTAAACATTTACGACATCCTAGAGCCTTGCTATCATGAAAGCAGTTCAAAAGATGCATCAGATATGAAAATTAGACTGCCTTCCAGC TTCTTGGAACTGGGTTCAGGAACAGAGAGGCCTCTTCCTGTCCGGACAAGGATGTTTGGTCGTGCCTGGCCACTTCGAGCTAACGTTAGAGAAGGAATTG TTCCCAGTTGGCCACAACTCATGAGCACCAATAGCGTTCCATGCACTGACGATGAAGTTGCCACCGTATGGCTCAACAATGAAGCAGTTAGGAAAGCAAT GAATGCCGAACCGACATCCGGAGATTGGGAGCTATGTACGGATAGAATCAGTTTCAGTCATGATGCTGGTAGCATGATTAAATACCATAGGAACTTGACA CTGAAAGGCTACCGAGCACTGATTTACAGTGGGGATCATGATATGTGCGTTCCATTCACTGGAAGTGAAGCATGGACGAGATCAATGGGATACAAGATCG TTGACAAATGGAGACCTTGGACTTCGAATGGACAAGTTGCTGGATTCACTCAAGGGTATGCTAACAACCTCACGTTCCTAACCATCAAGGGTGCTGGCCA CACTGTCCCAGAATATAAACCAAAAGAAGCACTGGACTTGTACAGCAGATTTCTGGCTGGTAAAGCAATGTGA
AA sequence Show only first row Show all	>Lus10025859 pacid=23177648 polypeptide=Lus10025859 locus=Lus10025859.g ID=Lus10025859.BGIv1.0 annot-version=v1.0 MAPFSYILVFALLSFGALLAHSAPENALVTQLPGFSGSFPSKHYSGYVTINEGTGKKLFYYLVQSQGNPSKDPLVLWLNGGPGCSSFDGFVYEHGPFNFE KTKEGLPILHLNPYSWSKVSSVLYVDSPAGVGFSYAENTSEYETGDLKTATDSHDFLLKWFELYPEFLSNPFFISGESYAGVYVPTLAYEVAKGIDSGVK PVINLKGYMVGNGVTDDVFDGNALVPFAHGMGLISDDLYQEVTQECKGNFYNPLEENCEQKLIEVDREVSGLNIYDILEPCYHESSSKDASDMKIRLPSS FLELGSGTERPLPVRTRMFGRAWPLRANVREGIVPSWPQLMSTNSVPCTDDEVATVWLNNEAVRKAMNAEPTSGDWELCTDRISFSHDAGSMIKYHRNLT LKGYRALIYSGDHDMCVPFTGSEAWTRSMGYKIVDKWRPWTSNGQVAGFTQGYANNLTFLTIKGAGHTVPEYKPKEALDLYSRFLAGKAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10038240 [exp]	1.7	0.9386
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10026299 [exp]	4.1	0.9150
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	5.6	0.9492
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	8.9	0.9424
AT5G03260		LAC11	laccase 11 (.1)		Lus10026512 [exp]	9.0	0.9105
AT3G61490			Pectin lyase-like superfamily ...		Lus10028766 [exp]	17.0	0.8552
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	18.2	0.9285
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	18.4	0.9359
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	21.1	0.9305
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	21.2	0.9205

Compare expression of checked genes

Lus10025859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.