Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 172 / 3e-54 Protein of unknown function, DUF538 (.1) AT3G07460 163 / 8e-51 Protein of unknown function, DUF538 (.1.2) AT5G16380 142 / 2e-42 Protein of unknown function, DUF538 (.1) AT5G54530 113 / 2e-31 Protein of unknown function, DUF538 (.1) AT1G61667 112 / 6e-31 Protein of unknown function, DUF538 (.1) AT5G19860 95 / 5e-24 Protein of unknown function, DUF538 (.1) AT1G55265 89 / 1e-21 Protein of unknown function, DUF538 (.1) AT4G02360 82 / 2e-19 Protein of unknown function, DUF538 (.1) AT1G02813 72 / 1e-15 Protein of unknown function, DUF538 (.1) AT4G02370 72 / 2e-15 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038238 [exp] 332 / 9e-117 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10029538 [exp] 187 / 7e-60 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 187 / 1e-59 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 187 / 1e-59 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 164 / 2e-51 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 147 / 3e-44 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 147 / 7e-44 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 109 / 7e-30 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 108 / 1e-29 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177800 [exp] 209 / 2e-68 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 204 / 7e-67 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 110 / 3e-30 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 110 / 5e-30 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 100 / 1e-26 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 100 / 5e-26 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 98 / 2e-25 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 96 / 1e-24 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 96 / 2e-24 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 95 / 2e-24 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10025861 pacid=23177597 polypeptide=Lus10025861 locus=Lus10025861.g ID=Lus10025861.BGIv1.0 annot-version=v1.0 ATGTTCGTCATATTCTTCTTTCAAATAGCGCGAGGAGTGGCCAAGAGAGGAGCTAAGCTCCTTGACAGAATGGCTCTCGCTTCTCTTCTCTCTTTTCTTC TCTATATCGCAGTCTCAATCCCTAGCGCGGTCTCGGATCAGGAGACGAATCACACTTCAATCTACGATGTCTTGAAGGAGAAAGGGCTGCCGATGGGATT GCTACCAAAAGGAGTTAGGGATTTCAAATTTGACGAGTCGTCGGGTCTTTTTGAGGTTCATTTGGATCAAGCCTGCAATGCCAAGTTCGAGAACGAGCTG CATTACGATAGCAATGTCACGGGGAAGCTCAGCTACGGTCAGATCGAGGCCCTATCCGGAATCTCGGCCAAGGAGCTGTTCCTCTGGTTCCAGGTGAAGG CAATTCGGGTTGACGTTTCGGATGCGGGGCTTATTTGCTTTGACGTTGGGGTCGTGGTGAAGAAATTTTCTGTTTCCTTGTTCGAGGCTCCCAAGGATTG TGCTACTGCAGCTGCAGATGAGGAGAGGGAGGAAGTCGCAACTGAGAGGTTTATTGAAGATGCTTTGGCTACGTGGTCTCAGCATCATGGTACTTGGGTT GCGGTAACAAATGAAGTTGCTGTATCAGGAAGAATAATCGGGAAAGGAAGAGACGACTCTGATGAAGATGAGTACAATGGCACATTGAGGTTGGAAAGCA TTTTAGTCCTCTGA
AA sequence Show only first row Show all	>Lus10025861 pacid=23177597 polypeptide=Lus10025861 locus=Lus10025861.g ID=Lus10025861.BGIv1.0 annot-version=v1.0 MFVIFFFQIARGVAKRGAKLLDRMALASLLSFLLYIAVSIPSAVSDQETNHTSIYDVLKEKGLPMGLLPKGVRDFKFDESSGLFEVHLDQACNAKFENEL HYDSNVTGKLSYGQIEALSGISAKELFLWFQVKAIRVDVSDAGLICFDVGVVVKKFSVSLFEAPKDCATAAADEEREEVATERFIEDALATWSQHHGTWV AVTNEVAVSGRIIGKGRDDSDEDEYNGTLRLESILVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	0	1
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	1.4	0.8234
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10000050 [exp]	3.2	0.7931
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	5.5	0.7262
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	8.0	0.7355
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	10.2	0.7413
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	15.5	0.7163
AT1G69550			disease resistance protein (TI...		Lus10020237 [exp]	15.5	0.7142
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	16.3	0.7206
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	17.7	0.7345
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	19.4	0.6938

Compare expression of checked genes

Lus10025861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.