Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25410 493 / 6e-174 Sodium Bile acid symporter family (.1) AT2G26900 181 / 9e-53 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT4G22840 178 / 1e-51 Sodium Bile acid symporter family (.1) AT4G12030 178 / 2e-51 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT1G78560 150 / 6e-41 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038237 [exp] 749 / 0 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10006672 [exp] 178 / 3e-51 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10007016 [exp] 178 / 3e-51 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10008914 [exp] 172 / 1e-47 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 172 / 1e-47 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10005565 [exp] 146 / 1e-39 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 149 / 9e-39 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 132 / 3e-34 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10035803 [exp] 126 / 6e-32 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178000 [exp] 559 / 0 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 186 / 4e-54 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 179 / 2e-51 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 145 / 4e-39 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 137 / 4e-36 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10025862 pacid=23177647 polypeptide=Lus10025862 locus=Lus10025862.g ID=Lus10025862.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCAATTTATTATCCCTCCCCCGCACTCCCAATTCCACTACTACGGCCACAATCAAAGCTCCTGACGGCGAAGCCACTGAATTATGTTCCTA TGCCGGCATTGGCTTCTCCACTTTGCACTTTGATTTCTACAAATCAGAAGAAGAAGAATGACGGGGCACTGTTCACGGTCGCCTGCTCCAGCTCTGCCTC GCCGTTCTTCGGCAGAGTTGGGTCACAGCGAAGGGAAGGGAACTCTTGTCTGCTGTACTTCGGAGTCAATTACCCGAATGCGGAGGCCGCCAAGACCAAT TCTTCTCAGGTTCTCTCTGCAATGCTTCCCTTTGTCGTTGCCGCTACTGCCGTTGCAGCTCTTGCTCAGCCGTCCACTTTCACTTGGGTGTCTAAGGATC TGTATGCTCCAGCACTCGGTGGAATCATGCTGTCAATTGGAATTAAACTATCGATTGATGACTTTGCTCTGGCATTTAGAAGACCTTTACCACTGTCTGT TGGGTTTATCGCGCAGTATGTGCTCAAACCGGTCCTTGGGTTATTCATTGCAAAGGCATTTGGGATATCGCAGATGTTCTATGCGGGATTTGTTCTCACC TCATGTGTTGCTGGGGCACAGTTATCTAGCTATGCTAGTTTTTTAAGTAACGGTGATGTTGCACTGAGCATTCTGCTTACTAGCTCAAGCACCATTGCAT CGGTAATCGTCACGCCTCTTTTGACTGGGCTAGTCATTGGCTCCGTTGTTCCAGTTGATGCTATTGCGATGTCAAAATCAATCTTGCAGGTTGTTCTTGT TCCCGTCACTCTTGGTCTTGCACTGAATACGTATGCAAAGCCAGTTGCCGATTTTATACAACCTGTGATGCCCGTTGTTGCTATGGTGTGTACCTCCTTA TGCATTGGCAGTCCTCTAGCCATAAACAGGAGCCAGATTCTGTCTGCAGAAGGTCTCCGGCTTGTTCTTCCGGTACTGACATTTCATGCAGTGGCATTCA CTCTGGGGTACTGGGTCTCCAGGATTCCAGCTCTGAGGCTAGACGAGGAAGTTAGCAGGACGATATCGCTGTGCACAGGGATGCAAAGCTCAACATTAGC AGGACTTTTAGCAAGCCAGTTCCTTGGAAGCAGCCAAGCGGTTCCACCGGCATGTTCAGTGGTTGCAATGGCAATAATGGGTCTTTGCCTTGCATCTTTC TGGGGCAGTGGGTTCCGGATAAGAGACCTACTATCTCACTTGATTCCGGAATTGAGCTCCACCGTTGAGGCTTAG
AA sequence Show only first row Show all	>Lus10025862 pacid=23177647 polypeptide=Lus10025862 locus=Lus10025862.g ID=Lus10025862.BGIv1.0 annot-version=v1.0 MASSIYYPSPALPIPLLRPQSKLLTAKPLNYVPMPALASPLCTLISTNQKKKNDGALFTVACSSSASPFFGRVGSQRREGNSCLLYFGVNYPNAEAAKTN SSQVLSAMLPFVVAATAVAALAQPSTFTWVSKDLYAPALGGIMLSIGIKLSIDDFALAFRRPLPLSVGFIAQYVLKPVLGLFIAKAFGISQMFYAGFVLT SCVAGAQLSSYASFLSNGDVALSILLTSSSTIASVIVTPLLTGLVIGSVVPVDAIAMSKSILQVVLVPVTLGLALNTYAKPVADFIQPVMPVVAMVCTSL CIGSPLAINRSQILSAEGLRLVLPVLTFHAVAFTLGYWVSRIPALRLDEEVSRTISLCTGMQSSTLAGLLASQFLGSSQAVPPACSVVAMAIMGLCLASF WGSGFRIRDLLSHLIPELSSTVEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25410			Sodium Bile acid symporter fam...		Lus10025862 [exp]	0	1
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	1.0	0.9526
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	3.9	0.9171
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	5.1	0.9175
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	6.7	0.9070
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	9.4	0.9129
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	11.0	0.9088
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	14.1	0.9072
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	14.1	0.9112
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	19.0	0.9034
AT1G62780			unknown protein		Lus10032229 [exp]	21.8	0.9084

Compare expression of checked genes

Lus10025862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.