Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 798 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 795 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 770 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038236 [exp] 894 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 886 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 870 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 842 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 838 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 811 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 810 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 198 / 3e-62 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 174 / 4e-51 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 808 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 805 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 804 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10025863 pacid=23177628 polypeptide=Lus10025863 locus=Lus10025863.g ID=Lus10025863.BGIv1.0 annot-version=v1.0 ATGGCAGACAGCGAGGACAAGAACATTGAGATTTGGAAGATAAAGAAGCTTATAAAATCACTGGAAGCTGCTCGGGGAAATGGAACGAGCATGATTTCAC TAGTCATACCTCCTCGTGATCAGATATCACGTATTGCTAAGATGCTCGGCGATGAGTATGGAACTGCTTCGAATATTAAGAGCAGGGTCAATCGGCAGTC TGTACTTGGTGCTATCACATCTGCTCAGCAGAGGCTTAAACTCTATAACAGGGTTCCTACGAATGGACTTGTGTTGTACACCGGCACTATTTTGACGGAT GATGGGAAGGAAAAGAAAGTGACTATGGACTTTGAGCCTTTTAAACCAATCAATTCATCTCTCTACCTTTGTGACAACAAGTTCCATACCGAAGCATTGA ATGAACTATTGGAGTCTGATGACAAGTTTGGTTTCATCGTCATGGATGGTAATGGCACCTTGTTTGGAACACTGAGTGGGAACACCAGGGAAATTCTGCA TAAGTTCTCAGTTGACTTGCCTAAGAAACATGGAAGAGGAGGACAGTCGGCTCTTCGTTTTGCTAGACTCCGAATGGAGAAGCGCCACAATTATGTGAGG AAGACAGCTGAACTTGCTACACAGTTTTATATAGACCCATCCACCAGCCAGCCGAATGTATCTGGCCTAATTCTTGCCGGATCTGCCGACTTTAAGACTG AGCTGGGTCAGTCTGATATGTTTGATGCTCGACTTGGAGCGAAGATTCTGAATGTTGTGGATGTGTCCTATGGCGGAGAAAACGGTTTCAACCAGGCAAT TGAGCTTTCTGCCGAGATTTTGTCCAATGTGAAGTTTATCCAGGAGAAGAAGCTGATAGGAAAGTACTTTGAAGAGATTAGTCAAGATACGGGGAAATAT GTATTTGGCGTGGATGATACATTGTCAGCTTTGGATATGGGTGCAGTTGAGATTCTCATTGTGTGGGAGAATCTAGAGATCAACAGGTATGAGTTGAAGA ACAGTGCCAACGGTGAGATTGTTGTCAAACATTTTACCAAAGAGCAAGAGACCAATGAAAGCAACTTTAGGGATTCGTCCACTTCGGCTGAACTGGAGGT TCAGGACAAGATGCCTCTGCTCGAATGGTTTGCTAACGAGTACAAGCGATTTGGTTGCACTCTTGAGTTTGTTACCAACAAATCACAGGAAGGGTCCCAA TTCTGCAGAGGGTTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTCGACATGAGATCGTTTGATGATGTTTCCGATGATGGGGAAGGAGTTTACGATT CTGAATAG
AA sequence Show only first row Show all	>Lus10025863 pacid=23177628 polypeptide=Lus10025863 locus=Lus10025863.g ID=Lus10025863.BGIv1.0 annot-version=v1.0 MADSEDKNIEIWKIKKLIKSLEAARGNGTSMISLVIPPRDQISRIAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPTNGLVLYTGTILTD DGKEKKVTMDFEPFKPINSSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVR KTAELATQFYIDPSTSQPNVSGLILAGSADFKTELGQSDMFDARLGAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKY VFGVDDTLSALDMGAVEILIVWENLEINRYELKNSANGEIVVKHFTKEQETNESNFRDSSTSAELEVQDKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQ FCRGFGGIGGILRYQVDMRSFDDVSDDGEGVYDSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10025863 [exp]	0	1
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	10.0	0.6756
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	50.2	0.6440
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	101.9	0.6011
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	146.1	0.5928
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	158.5	0.5989
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10041243 [exp]	205.2	0.5796

Compare expression of checked genes

Lus10025863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.