Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48460 1006 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G35700 832 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT4G26700 828 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G55400 825 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT2G04750 780 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48470 466 / 1e-154 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038235 [exp] 1200 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10014894 [exp] 823 / 0 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10016580 [exp] 823 / 0 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10012361 [exp] 692 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10038234 [exp] 630 / 0 AT5G48470 540 / 0.0 unknown protein Lus10006407 [exp] 623 / 0 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251600 [exp] 1140 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Potri.001G360100 [exp] 877 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.011G086500 [exp] 874 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 853 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.002G251400 [exp] 463 / 1e-153 AT5G48470 529 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10025865 pacid=23177576 polypeptide=Lus10025865 locus=Lus10025865.g ID=Lus10025865.BGIv1.0 annot-version=v1.0 ATGTTGTCACCAACATTTGAGTTCCGTCTCCAATCGCCCCACCACCATAAACATGGCCGTCTGAAGCAACCTAAGAGAACGCAGCGGCTGCTACCGGCGA AGTGCGCCAGTAATGAGGAGGCAGAAAGGTACATGGAGCAAGAACTGGGGATACCAACTACTAGAACCAGGACCAAAGAAGAGTGGAATGACAAGCCCGA CAGTTCTGGGTACGAAGCTCTGCTCAGAGGCGGTGACCAGGTCACTTCCGTCCTCGAAGAGATGATTACCCTTTTGAAAGACATGAACATGGATGAAGCA TCTGAGGAAGTGGCAGTTGAATTAGCTGCACAAGGAGTGATAGGGAAAAGAGTGGACGAGATGGAGTCTGGGTTTATGATGGCCTTAGATTATATGATTG ACCTTGCTGGCAAAGACCAAGATGACAAGCGAAAGGAACTGTTGGGAGTTATCAAGGAAACTGTGTTGGGCCATCTGACTAGAAAATGCCCCCCACATGT TCAAGTGGTTGGTTTGCTATGTAGAACTCCGGACAAGGAGAGCAGGCATGAGCTATTACGTCGAGTGGCTGCTGGTGGCGGTGCCTTTGAAGGAAAGGAG GGAACAAAAGTTCATCTCCCTGGAGCAAATTTAAATGAAATCGCTAACCAAGCGGATGACATACTTGAGACGATGGAAACTCGACCTGTGATTCCTGATC GCAAACTACTTGCAAGGCTTGTCTTGATCAGAGAGGAAGCCAGGGAGATGATGGGAGGTGGAATATTGGATGAAAGAAATGACCGTGGATTTACCACTCT TCCTGAATCTGAGGTGAACTTCTTAACCAAACTAGTTGCTCTGAGACCTGGGAGAACTCTACGCGACATGATAAAAAATGTGATGCTGGGAAAAGATGAA GGTACAGAAGATACTACTGAGGAGGGAGGCCGCATCAATGAAAGGGATTTAAAAGGAATTGCAGGAAGGGGAAGTGTCAGTGGCCGAAAACCACTTCCCG TACGCCCTGGCATCTTTCTTGAGACTGTCACCAAGGTACTTGGTGGCATATACTCTGGAAATGTCTCTGGCATCACAGCACAGCATCTAGAATGGGCACA TTTCGGGGGTCCCTTTGCTGGTGGTTGGCTGTCTGTATCGACTTCACTGGCAGGAGCTTCACCTGATTTATCAGTGATTTTGCCTTGCTTTGCTCTTCTC CTAACTCACCTGCTTTCCGTTTCCCTTTCCAAATCCTGTTGTATCGTTACTGATCTGATCTCATCCAGTCGTTATCGTTTAGTGAAAGATGATAGTCGGA CGACTCTCGAGAAGGAACCATCTAATGTCGGCCTATGTAGGAGTTCTCGTCTCAGATCCATGGCTCCAGAACCAGTTCACTCAGGTGGAGCTCCGCAGCT TAAAATCTCACAGAAGTTTATTAGCATGAGAAGAGAGAGTGGGAAGTTGACGCTCAGGGACATGGCGTCGCGGATGTCCAGATTGAAAGTTGTGGGAGAG AATTTGACCGAGGCAGAGCGAGCTTCTTTTATTCAGGATTTGTATCAGAATCTTGACGATGAGGTCGATTTCGAGTTTTTTCTCAAGGTGTATTTGAAGC TTCATGTACATGCAAGTGCCAGAACAGGAAGCGTGGCTAAGAACTCATCCGCATTCCTCAAAGCTGCCACCACCACGCTGCTTCACACCATCAGCGACCC AGAAAAGGCTTCTTATGTAGCCCACATTAATAACTACTTAGCAGGAGATAACTTCTTGAAACAATACCTACCTATAGATCCTTCAACTAATGATCTTTTT GAGATTGTCAAGGATGGTGTGCTTCTTTGTAAGCTTATCAATGTGGCTGTTCCTGGTACAATTGATGAAAGGGCCATTAATACTAAGAGTGTTCTCAATC CGTGGGAAAGAAATGAAAATCATACACTCTGCCTCAACTCTTGCAAGGCTATTGGTTGTACTGTTGTCAATATTGGCACCCAAGACTTCATTGAAGGAAG ACGCCATCTTGTGCTTGGATTGATTTCTCAAATTATCAAGATACAACTCTTGGCAGACCTCAACCTTAAGAAAACACCTCAGTTGTTGGAGTTGGTCCAT GACAGTCAGGAAGTAGAAGAGTTGATGAGTCTACCGCCAGAGAAGATCTTATTGAGATGGATGAATTTTCAACTGAAGAAATCACCATACAAGAAAACAG TCTCAAACTTCTCTTCTGATGTGAAGGATGCAGAGGCTTATGCCCACCTTCTAAATATTCTTGCTCCCGAGTGCAGTAATCCATCCACTCTAACAGTCAA AGATTATTTGGCAAGAGCAAAGTTGGTCCTTGAACATGCTGACAGAATGGGGTGCAAGAGATACTTAACGGCAAAAGATATCGTTGAAGGTTCCCCAAAT CTTAATCTGGCCTTCGTTGCCCATATTTTTCAGCATAGGAATGGGCTATCGACCGATAAACCGCAGATAAGTTTCCTTGAGACTTTACCCGATGACACCC AAATCTCCAGAGAAGAGCGGGCATTCAGATTGTGGATGAACAGTCTAGGAAACTCTAGTTATATAGACAACGTCTTTGAAGATCTTAGGAACGGGTGGCT GCTTCTGGAGACGCTTGATAAGGTGTCCCCGGGAATTGTAAACTGGAGGATCGCAAATAAACCGCCAATCAAATTGCCATTCAGAAAGGTGGAGAACTGC AACCAGGTCGTGAAAATAGGGAAACAACTAAAATTCTCCCTCGTTAACATTGCTGGAAATGACATCGTACAAGGAAACAAGAAATTGATACTAGGGTATC ATTCAAATAGCATTATGAACCAACCCGAGAATCGTCTTCTAGCTTACTTGTGGCAGTTGATGAGGTACAATATCCTCCAACTCCTCAAGAACTTGAGATT CCATTCCCACGGAAAAGAAATCAATGACGTTGATATCTTACAATGGGCCAACACCAGAGTCAGTAGCTTGGGTGGCCAAACTCGCATGAACAGCTTTAAG GATAAAAGCTTGTCAGATGGCGTATTCTTCCTTGAGTTGCTCAGTGCGGTTCAGCCAAGAGCAGTGAATTGGAGTCTCGTAACTAAAGGCATAACAGATG AAGAGAAAAAGATGAACGCCACATATATCATCAGCATAGCTAGAAAGCTAGGATGTTCGATATTTCTGCTTCCGGAGGACTTAACTGAGGTGAATCAGAA GATGATCCTGACACTAACGGCCAGCATTATGTACTGGCAATTAAAGCAACCTACGGAGGAGAAACCTGCAGCGGGGAGTTCAGATAGTGAGACCCTTCCG AACTCGACAACGGATGATTCTGCCTCCGAGTCATCCTCGGAAGAAAATCCAAATTTATGA
AA sequence Show only first row Show all	>Lus10025865 pacid=23177576 polypeptide=Lus10025865 locus=Lus10025865.g ID=Lus10025865.BGIv1.0 annot-version=v1.0 MLSPTFEFRLQSPHHHKHGRLKQPKRTQRLLPAKCASNEEAERYMEQELGIPTTRTRTKEEWNDKPDSSGYEALLRGGDQVTSVLEEMITLLKDMNMDEA SEEVAVELAAQGVIGKRVDEMESGFMMALDYMIDLAGKDQDDKRKELLGVIKETVLGHLTRKCPPHVQVVGLLCRTPDKESRHELLRRVAAGGGAFEGKE GTKVHLPGANLNEIANQADDILETMETRPVIPDRKLLARLVLIREEAREMMGGGILDERNDRGFTTLPESEVNFLTKLVALRPGRTLRDMIKNVMLGKDE GTEDTTEEGGRINERDLKGIAGRGSVSGRKPLPVRPGIFLETVTKVLGGIYSGNVSGITAQHLEWAHFGGPFAGGWLSVSTSLAGASPDLSVILPCFALL LTHLLSVSLSKSCCIVTDLISSSRYRLVKDDSRTTLEKEPSNVGLCRSSRLRSMAPEPVHSGGAPQLKISQKFISMRRESGKLTLRDMASRMSRLKVVGE NLTEAERASFIQDLYQNLDDEVDFEFFLKVYLKLHVHASARTGSVAKNSSAFLKAATTTLLHTISDPEKASYVAHINNYLAGDNFLKQYLPIDPSTNDLF EIVKDGVLLCKLINVAVPGTIDERAINTKSVLNPWERNENHTLCLNSCKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLLELVH DSQEVEELMSLPPEKILLRWMNFQLKKSPYKKTVSNFSSDVKDAEAYAHLLNILAPECSNPSTLTVKDYLARAKLVLEHADRMGCKRYLTAKDIVEGSPN LNLAFVAHIFQHRNGLSTDKPQISFLETLPDDTQISREERAFRLWMNSLGNSSYIDNVFEDLRNGWLLLETLDKVSPGIVNWRIANKPPIKLPFRKVENC NQVVKIGKQLKFSLVNIAGNDIVQGNKKLILGYHSNSIMNQPENRLLAYLWQLMRYNILQLLKNLRFHSHGKEINDVDILQWANTRVSSLGGQTRMNSFK DKSLSDGVFFLELLSAVQPRAVNWSLVTKGITDEEKKMNATYIISIARKLGCSIFLLPEDLTEVNQKMILTLTASIMYWQLKQPTEEKPAAGSSDSETLP NSTTDDSASESSSEENPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	1.4	0.8669
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	4.9	0.8221
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	6.7	0.8204
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	9.2	0.7829
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	10.8	0.8132
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	11.6	0.8075
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	11.7	0.7402
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	12.0	0.7948
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	12.4	0.7891
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	15.5	0.7921

Compare expression of checked genes

Lus10025865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.