Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 128 / 2e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15390 106 / 2e-25 HXXXD-type acyl-transferase family protein (.1) AT1G24430 101 / 9e-24 HXXXD-type acyl-transferase family protein (.1) AT1G24420 101 / 1e-23 HXXXD-type acyl-transferase family protein (.1) AT5G47950 99 / 7e-23 HXXXD-type acyl-transferase family protein (.1) AT3G30280 96 / 8e-22 HXXXD-type acyl-transferase family protein (.1) AT5G23970 93 / 8e-21 HXXXD-type acyl-transferase family protein (.1) AT5G47980 89 / 3e-19 HXXXD-type acyl-transferase family protein (.1) AT4G15400 71 / 2e-13 HXXXD-type acyl-transferase family protein (.1) AT5G48930 64 / 4e-11 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002893 [exp] 327 / 2e-109 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 307 / 9e-102 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 303 / 4e-100 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 287 / 8e-94 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 234 / 4e-73 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 228 / 3e-71 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 170 / 1e-48 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 169 / 4e-48 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 167 / 1e-47 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124268 [exp] 186 / 5e-55 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 186 / 5e-55 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 181 / 5e-53 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 181 / 6e-53 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 179 / 2e-52 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 179 / 2e-52 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 174 / 2e-50 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 174 / 2e-50 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 158 / 2e-44 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 149 / 6e-41 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025867 pacid=23177510 polypeptide=Lus10025867 locus=Lus10025867.g ID=Lus10025867.BGIv1.0 annot-version=v1.0 ATGGAAGTGTCGTTGACCTCAGTCCAGCAGATCAGACCATTTCCAGGCGCAACCCACGAATTGAAGCCATTTAAGCTAAGCATGCTTGATCAGCTCATCC CTTCCATTACTTCTCCATTGATCTTCTTCTACCCTTATTCCAAACCCAACACTAGTAATAGTGATCACAATCACATGATGAAACTTGTATCCTCCAACCT AAAATCCTCACTTTCCAAAACCCTCAACTCCTTCTACCCTCTCTCCGGCCGACTCATCAACGACACGTTCATCCACGACTTCCACCAAGGAGTCCCCTTC GCCGAAGCTCGAATCCCCGGTCAACGCCTCGCCGATTTCTTGCAACCCCCGAATCTCGAACTCCTCAATTACTTGCTCCCATTAGAGCCTGGCTGTCTCC TCCCGTCAAACGGCCCCCAACTCTCCGTACAACTCAACACATTCGACTGCGGCGGGATTGCCCTCGGGTTGAGCTTACACCACCGCCTCTTCGACGGAGC CACCACCAGCTTATTCCTCAAGACATGGGCCGGGTTCACAAACCCGACCCATAACAAACGGGCAGTACCCGATCCGGATTTAGTGAGTGCATCCTCTGTT TTCCCACCTTTCGAGTCCATGCCAGTCCAGAAAATGCCGCCCCTGTCTATGTTAATGAAACAAGGGAGTAGCAAGCCGAGAAGATTCGTGTTCGATAACG ATGCTGTATCCAGATTGAGATCCATGGCGAGGAGCGATGGAGTTGAGAACCCTAGCCGTACCGAAGCACTGTTTGCCTTCATGTGGAGATCGGTGATGAA GGCGGCGGTGGCGTCTGCTGATGCTGATACACAATCTCCGAAACCGCTGCGTTTTAGACAATCGGTTGATATGAGGTCGAGAATGGGTCAGCGTTTGTCC AAGAGGTCGATTGGGAATCTGGTGGCGAGCGCGGTTGTTTCGTGGGAAGAGGATAGCTGCTCGATGAAGGAGATAGTGGCGAGATTAAGAGCAGGAGTTC AAAGGATCGACGAAAACTACCGCCGCCGCCAGACATTTTGTCGATATTGA
AA sequence Show only first row Show all	>Lus10025867 pacid=23177510 polypeptide=Lus10025867 locus=Lus10025867.g ID=Lus10025867.BGIv1.0 annot-version=v1.0 MEVSLTSVQQIRPFPGATHELKPFKLSMLDQLIPSITSPLIFFYPYSKPNTSNSDHNHMMKLVSSNLKSSLSKTLNSFYPLSGRLINDTFIHDFHQGVPF AEARIPGQRLADFLQPPNLELLNYLLPLEPGCLLPSNGPQLSVQLNTFDCGGIALGLSLHHRLFDGATTSLFLKTWAGFTNPTHNKRAVPDPDLVSASSV FPPFESMPVQKMPPLSMLMKQGSSKPRRFVFDNDAVSRLRSMARSDGVENPSRTEALFAFMWRSVMKAAVASADADTQSPKPLRFRQSVDMRSRMGQRLS KRSIGNLVASAVVSWEEDSCSMKEIVARLRAGVQRIDENYRRRQTFCRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025867 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	49.2	0.6739
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	63.5	0.6761
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	78.9	0.6624
AT5G18250			unknown protein		Lus10020259 [exp]	98.1	0.6758
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	121.9	0.6490
AT2G26470			unknown protein		Lus10025870 [exp]	124.5	0.6239
AT5G47020			unknown protein		Lus10007258 [exp]	134.2	0.6469
AT2G41190			Transmembrane amino acid trans...		Lus10003817 [exp]	176.8	0.6399
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	184.1	0.6357

Compare expression of checked genes

Lus10025867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.