Plant FIBer expression Database

Lus10025869 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48520 828 / 0 AtAUG3 augmin 3, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038231
[exp]
1160 / 0 AT5G48520 961 / 0.0 augmin 3, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G191100
[exp]
893 / 0 AT5G48520 993 / 0.0 augmin 3, unknown protein
PFAM info
Representative CDS sequence
>Lus10025869 pacid=23177619 polypeptide=Lus10025869 locus=Lus10025869.g ID=Lus10025869.BGIv1.0 annot-version=v1.0
ATGACCGGAGCTCGATTGTGCAGATTGCTGGGTGAATTGGGGTACGAAGATGCGCAGACATTAGACCCTGATAGCTTCGAATGGCCCTTCCAATACGACG
ATGCTCGCCCCATTCTCGACTGGATCTGCTCCAGCCTCCGCCCTTCCAACGTCCTCTCCCTCCCTGAGCTCTCACAGTATGAGCAGTTTTTGCAAGAAGG
CAAGTTATTGGAGGGTGGTGACTTGGACTCTGCTTATGATAGTATTTCAGCATTTTCCTCTAGTCGGGACAACCAAGAGGCAGTTTTTGGAGCTGAAGAA
AGTTTAAAAGATATACGGGATGCAACTTTGGCATATAGGACTGAAGCCCTAGAGTTGCAGAGGCAACTCAGCCATCTGCAATCTCAATTCAACATGCTTA
CTGACCAGGCTTCGACTTTGGTACAAGGAAGGCGTGCTCGAGTGGCTGCAACATCTGCAGTAAACGGACACCTTGCGACACTAGATGATAGTTTGTCAGG
AAGAAACTTGCGTATGAATGATGTTCTTGAGAGGATTGCTTCTGCAGCAGAAGAGTTGGCTAATTATCATTCTGGGGAAGGCAGGTTTTTCAATTTTGTT
CGACCACATGTCTCTGATTTCGGAATCAATAAGAATACAGAGGATGGGATCTACTTGGCATACTCTGATTTCCACCCGTACTTGCTTGGAGATTCTTCTT
ACATGAGGGAAATAAACCAGTGGTTTTCCAAACAACTGGACACGGGTCCTTTTCGACTAGTTGCTGAAGAGGGAAAGTCAAAATGTTCTTGGGTCAGTCT
GGATGACATATCAAACGTTATCGTAAGAGATATAGAAATATCCCATCATCAGCGAGTATCTGAGCTCCAGAGGCTTCGGTCTATATTTGGAACAAGTGAA
AGACAATGGGTTGAAGCGCAGGTTGAAAATGCAAAACAGCAAGCTGTTCTTGTTGCTTTAAAATCTCAGGTAGCATCAGATGAAGCACACATTCATCTTG
ACCTTCATTCTCTCAGGAGGAAGCATTCAGAACTCGTGACAGAACTCACAAATCTTCATCACAAGGAAGAAAAGTTGCTATCCGAGACCATTCCAGAACT
TTGTTGGGAGTTGGCTCAATTGCAAGATACGTATATTTTGCAAGGTGACTATGATTTGAAAGTCATGAGACAAGAACACTATATCACCAGGCAGAAAACG
GTACTTTATGACATTACTTTTCTTCTTAAATTGAAGTATCTTAGCCAGTTCATAATGCATCTTATAAATCAACTAGCAAGGCATCAGTTCCTCAAATTAG
CTTGTCAGGTTGAAAAGAAGAGCATGCTTGGAGCATATTCATTACTCAAAGTCATCGAGTCAGAACTTCAAGGCTACCTCTCAGCGACGCAGGGCCGAGT
GTATGTTCCTGTTCTGCTGTCAGATGCTCACGCTGGATTGTCAGGATATGTATCAGCTCCTGGTATCGTGCAGCAAATTTCTGCTCTTCATTCGGACTTG
ATGACGCTGCAGTCTGATCTTGATAATTCCCTCCCAGAGGATAGAAACAGATGCATCAATGAGCTGTGCACACTAATTCAAAGTATGCAGCAGCTGCTGT
TTGCATCATCAACCACTGCACAGCCTATTCTAACCCCTCGGGCATTGATGGAGGAGCTTGATGGCCTGGGGAAGAAAAATGTCGAACTAGCTGCTGCAGT
TGAAGAAGTTAACCTTGAACGCTTCAAGAAAAATGAGATCGTAAAGCATCATTCACAGGGAGTGGGGATTCAGAGGCAAGTATTTGTAGACTTTTTCTGC
AATCCTGACCGTTTGAGGGAACTGGTTCAAGATCTAAGGGCTCGTTTTAGAGCTATGCAAGTACCATAG
AA sequence
>Lus10025869 pacid=23177619 polypeptide=Lus10025869 locus=Lus10025869.g ID=Lus10025869.BGIv1.0 annot-version=v1.0
MTGARLCRLLGELGYEDAQTLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLPELSQYEQFLQEGKLLEGGDLDSAYDSISAFSSSRDNQEAVFGAEE
SLKDIRDATLAYRTEALELQRQLSHLQSQFNMLTDQASTLVQGRRARVAATSAVNGHLATLDDSLSGRNLRMNDVLERIASAAEELANYHSGEGRFFNFV
RPHVSDFGINKNTEDGIYLAYSDFHPYLLGDSSYMREINQWFSKQLDTGPFRLVAEEGKSKCSWVSLDDISNVIVRDIEISHHQRVSELQRLRSIFGTSE
RQWVEAQVENAKQQAVLVALKSQVASDEAHIHLDLHSLRRKHSELVTELTNLHHKEEKLLSETIPELCWELAQLQDTYILQGDYDLKVMRQEHYITRQKT
VLYDITFLLKLKYLSQFIMHLINQLARHQFLKLACQVEKKSMLGAYSLLKVIESELQGYLSATQGRVYVPVLLSDAHAGLSGYVSAPGIVQQISALHSDL
MTLQSDLDNSLPEDRNRCINELCTLIQSMQQLLFASSTTAQPILTPRALMEELDGLGKKNVELAAAVEEVNLERFKKNEIVKHHSQGVGIQRQVFVDFFC
NPDRLRELVQDLRARFRAMQVP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G48520 AtAUG3 augmin 3, unknown protein Lus10025869
[exp]
0 1
AT4G24530 O-fucosyltransferase family pr... Lus10015890
[exp]
2.0 0.8583
AT1G48270 GCR1 G-protein-coupled receptor 1 (... Lus10017120
[exp]
3.3 0.8086
AT2G34710 HD ATHB14, PHB-1D,... PHABULOSA 1D, PHABULOSA, ARABI... Lus10023357
[exp]
6.0 0.8328
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10010717
[exp]
6.5 0.8152
AT1G14570 UBX domain-containing protein ... Lus10039137
[exp]
6.5 0.8050
AT1G50410 SNF2 domain-containing protein... Lus10013452
[exp]
8.8 0.8733
AT5G25510 Protein phosphatase 2A regulat... Lus10012116
[exp]
10.4 0.7921
AT2G46980 unknown protein Lus10009259
[exp]
13.9 0.8140
AT1G23220 Dynein light chain type 1 fami... Lus10034609
[exp]
17.0 0.7795
AT3G21215 RNA-binding (RRM/RBD/RNP motif... Lus10033388
[exp]
21.2 0.7576

Lus10025869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.