Plant FIBer expression Database

Lus10025870 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26470 248 / 3e-80 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038230
[exp]
362 / 7e-127 AT2G26470 379 / 2e-129 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G250400
[exp]
263 / 1e-87 AT2G26470 389 / 6e-133 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02586 SRAP SOS response associated peptidase (SRAP)
Representative CDS sequence
>Lus10025870 pacid=23177542 polypeptide=Lus10025870 locus=Lus10025870.g ID=Lus10025870.BGIv1.0 annot-version=v1.0
ATGGGAAGGGTGGGTGATGAGTCAGTAGCTGAGAAGGCTTCTTTCCGTCGTTTACTTCCAAGAAACCGGTGTCTTGTGGCTGTAGAAGGATTCTACGAGT
GGAAGAAAGATGGCTCTAAAAAGCAGCCTTACTACGTCCATTTCAGGGACGGTCGACCACTTGTGTTCGCTGCACTTTATGATTCTTGGACAAACTCTGA
AGGCGAGAAACTCTACACATTCACCATTCTTACAACATCATCCTCATCAAAGCTCAACTGGCTGCATGATAGAATGCCTGTCATTTTGGGGGATAAAGAT
GTTACTGACACTTGGCTCAATGGTGATCCCTCAACATACGATCCGCTGCTCAAGCCTTACGAAGATTCGGATTTGATATGGCACCCGGTGACACCTGCTA
TGGATAAATTCTCTTTTGAGGGGCCAGAGTGTATCAAAGAGACACAGTTGAAGAAAGAGGAGAAAGGCAACATATCAAAATTCTTTGTGAAGGAAGAGGA
CATGATAAAACCAGGCGTTGCAGAGATAGACGAGAAATCCAAGGTGAAGTGGGAATTCGAGGACACTAGAGCTGGGAAGAAAGCTAAGGTGAAAAATGAT
GGCGATAATAAACAGCCAACCCTTCTTTCCTACTGTGGGAAAAAGTAA
AA sequence
>Lus10025870 pacid=23177542 polypeptide=Lus10025870 locus=Lus10025870.g ID=Lus10025870.BGIv1.0 annot-version=v1.0
MGRVGDESVAEKASFRRLLPRNRCLVAVEGFYEWKKDGSKKQPYYVHFRDGRPLVFAALYDSWTNSEGEKLYTFTILTTSSSSKLNWLHDRMPVILGDKD
VTDTWLNGDPSTYDPLLKPYEDSDLIWHPVTPAMDKFSFEGPECIKETQLKKEEKGNISKFFVKEEDMIKPGVAEIDEKSKVKWEFEDTRAGKKAKVKND
GDNKQPTLLSYCGKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26470 unknown protein Lus10025870
[exp]
0 1
AT4G15417 ATRTL1 RNAse II-like 1 (.1) Lus10000182
[exp]
25.1 0.7149
AT4G15417 ATRTL1 RNAse II-like 1 (.1) Lus10015141
[exp]
28.4 0.6957
AT1G66370 MYB ATMYB113 myb domain protein 113 (.1) Lus10042522
[exp]
40.6 0.6551
AT1G11920 Pectin lyase-like superfamily ... Lus10018430
[exp]
45.7 0.6599
AT4G14440 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL C... Lus10041153
[exp]
48.0 0.6440
AT5G01740 Nuclear transport factor 2 (NT... Lus10022755
[exp]
57.2 0.6211
AT3G20190 Leucine-rich repeat protein ki... Lus10034795
[exp]
66.2 0.6022
AT4G31050 Biotin/lipoate A/B protein lig... Lus10008181
[exp]
78.5 0.5931
AT4G16480 ATINT4 inositol transporter 4 (.1) Lus10010501
[exp]
80.7 0.5975
AT3G26040 HXXXD-type acyl-transferase fa... Lus10025867
[exp]
124.5 0.6239

Lus10025870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.