Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 87 / 2e-19 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 74 / 4e-15 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT3G04100 73 / 4e-15 MADS AGL57 AGAMOUS-like 57 (.1) AT1G28460 72 / 4e-15 MADS AGL59 AGAMOUS-like 59 (.1) AT1G65360 70 / 6e-14 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 68 / 5e-13 MADS AGL28 AGAMOUS-like 28 (.1) AT4G36590 67 / 6e-13 MADS MADS-box transcription factor family protein (.1) AT1G29962 66 / 9e-13 MADS AGL64 AGAMOUS-like 64 (.1) AT1G28450 62 / 2e-11 MADS AGL58 AGAMOUS-like 58 (.1) AT2G34440 61 / 4e-11 MADS AGL29 AGAMOUS-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028490 [exp] 262 / 7e-87 AT4G36590 108 / 3e-28 MADS-box transcription factor family protein (.1) Lus10028473 [exp] 182 / 1e-56 AT5G60440 102 / 8e-26 AGAMOUS-like 62 (.1) Lus10011787 [exp] 71 / 2e-14 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1) Lus10015271 [exp] 71 / 3e-14 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10020511 [exp] 67 / 7e-13 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10030663 [exp] 66 / 8e-13 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10012449 [exp] 67 / 9e-13 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10016563 [exp] 64 / 4e-12 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10030824 [exp] 64 / 5e-12 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130900 [exp] 106 / 1e-27 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G045900 [exp] 103 / 2e-26 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 99 / 2e-24 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 88 / 3e-21 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 85 / 3e-19 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 85 / 4e-19 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 81 / 5e-18 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 78 / 9e-17 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 71 / 2e-14 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.017G039800 [exp] 69 / 1e-13 AT5G60440 116 / 1e-31 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10025872 pacid=23177474 polypeptide=Lus10025872 locus=Lus10025872.g ID=Lus10025872.BGIv1.0 annot-version=v1.0 ATGGAATTTGTGCCTAACAACATCCATGATGACATCAGCAGCAACAGCGACGGCGAGGACACCAGCACTGCCATCAACCGTCCAGTTGCCAAGAAGACCA GAGGAAGGCGAAAGATCGAAATGAAGAAGATCGAGAAGGAGACGAATAAGATGATAACCTTTTCGAAGCGCAAATCTGGTATCTACAGGAAGGCCAGCGA GCTTGTCATCTTGACAGGCAGTGAGGTTGCCTTTTTGGTCTTTTCCCCTGCTGGCAAAGCCTTCACCTTTGCTCATCCTTCCTTTGACTACATAGCCAAG AAGTATTTGGGCCTACAGAACCAAGATCCATCGATTATGTCGTATGGACCTGTGGTGGTGTTGAGGCAGGCCCGGACCAGCGAGGCGACCATTAGGTACA GAGAATCGCTAGAGGGGTTCGACAATGATACGAAAAGGCAGAGGGATTTGTTGGCTAGGATGGAAAGGAAGGCGTTGGACAACTGGTGGAACAGGTGCAT CGATTATGTGCATGGTTATGAAATCCAAGGGCTTGAGGATGCTTACTTGGAGGTGACGAACAAAGTTGAGCTAAAGAGGATGGAAGTCAGGCTGGGGATT AATGGCCTTAATACAACTGCTGGCAGTGGTAGTGATCCCTTTGCTTCTGGTTCCCATCCTTCTGAAAATATCCAGCTTCTTCCACAGCCGCCGGTGGACA TGGGACCACAGGCTGGGCTGATGAACATGGGCCAGCCCAACTTGACCCACTCGCTGCCGAATTTTTCAGCGGGGGACCCGGAGAACATGGAGGTGCTGAA TGGTGGTGACGGCGGCGAGAGAGCTGAGGCTTCTGATCCACTTTCCTTATTCGGGTCGGTCGGTGGTGGAAATGGAGGTGTCGGTTATTCGTCCTCCATT TTTTCTTTCCCTCCTGTGGAGTAA
AA sequence Show only first row Show all	>Lus10025872 pacid=23177474 polypeptide=Lus10025872 locus=Lus10025872.g ID=Lus10025872.BGIv1.0 annot-version=v1.0 MEFVPNNIHDDISSNSDGEDTSTAINRPVAKKTRGRRKIEMKKIEKETNKMITFSKRKSGIYRKASELVILTGSEVAFLVFSPAGKAFTFAHPSFDYIAK KYLGLQNQDPSIMSYGPVVVLRQARTSEATIRYRESLEGFDNDTKRQRDLLARMERKALDNWWNRCIDYVHGYEIQGLEDAYLEVTNKVELKRMEVRLGI NGLNTTAGSGSDPFASGSHPSENIQLLPQPPVDMGPQAGLMNMGQPNLTHSLPNFSAGDPENMEVLNGGDGGERAEASDPLSLFGSVGGGNGGVGYSSSI FSFPPVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	1.0	0.9119
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	2.4	0.8800
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	4.6	0.8253
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	6.9	0.8669
					Lus10006631 [exp]	8.5	0.7769
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	9.4	0.7821
AT1G72125			Major facilitator superfamily ...		Lus10001288 [exp]	10.6	0.7555
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	10.7	0.8354
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	12.3	0.8421
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	14.5	0.8321

Compare expression of checked genes

Lus10025872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.