Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 235 / 3e-76 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 221 / 2e-70 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 150 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 141 / 1e-39 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 124 / 6e-33 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 121 / 3e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 118 / 8e-31 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 112 / 1e-28 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 103 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 48 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 223 / 2e-71 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 136 / 7e-38 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 134 / 3e-37 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 122 / 2e-32 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 114 / 2e-29 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 114 / 2e-29 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10028302 [exp] 111 / 3e-29 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 113 / 4e-29 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 102 / 7e-25 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116900 [exp] 266 / 2e-88 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 260 / 3e-86 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 256 / 3e-84 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 255 / 8e-84 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 254 / 9e-84 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 253 / 2e-83 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 235 / 4e-76 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 233 / 2e-75 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 144 / 4e-41 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 120 / 1e-31 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10025873 pacid=23177666 polypeptide=Lus10025873 locus=Lus10025873.g ID=Lus10025873.BGIv1.0 annot-version=v1.0 ATGGTGAACACAGTAGTGGCCTACCAGAACCACTTCCTCCGTCACCTACTCAAACTAGCCGCGGGGACAGCACCCCAACCCGTCGAGATCGAGCAAGGAA CCGTCATCAACTTCTGGGCCCCCACTAACCCCAAACTCGCCACAAAACCGCCGTTACTATTCCTCCACGGCTTCGGCTTCAACGGCATCCTGACATGGCA GTTCCAGGTCCTCGCCTTCTCCAACACTCATTCCGTCTACGTCCCTGACTTGCTCTTCTTCGGCGACTCCTTCACCGACAGCCCCGACCGTTCTCCGGAA TTTCAGGCCGAATGTATGGGGAGGGCGTTGAAGAAGCTCGGGGTGGAGAAGGACTGCACTGTCGTCGGGTTCAGCTACGGCGGCATTTTGGCTTTCAAGA TGGCAAAGATGTTTCCGGATATGGTTGGGGCGGTTGTTGTGACCGGTTCGGGTATGGAGTTCACCGAGTCGATTAGTCAATCCGGGTTGAGGAGGTTGGG TTATGGGTCGTGGAAGGAGTGTCTTGTTCCTGAGAAGGTGGAAGGGTTGAAGAAGCTGTTGGATGTTGCTGCTGTTTTGAAACCCCGCCTCCCTGCTCGC ATTCTTAATGACGCTTTTGAGGCTTTGATAAAGCACAGGAAGGAGAGGGTGGAGGTACTGGAAGCGATGGTCATTGCTGATAACACGTTCAAAGTATACC CATATTCCCAGAAGATCCATTTCATATGGGGAGAAAATGATCAAATGATAGAAATGGAAGTGGCTCGTCAGCATGCTACTGAAGGGGAAAGCAACATTGG TGTCTGTAGAAAAGGCTGGCCATCTGGTTCAGATGGAGAGACCTTGCCATTTCAACAGGCACCTCAAAAACTTCCTCAACTCCTTGCAGGTAATTGA
AA sequence Show only first row Show all	>Lus10025873 pacid=23177666 polypeptide=Lus10025873 locus=Lus10025873.g ID=Lus10025873.BGIv1.0 annot-version=v1.0 MVNTVVAYQNHFLRHLLKLAAGTAPQPVEIEQGTVINFWAPTNPKLATKPPLLFLHGFGFNGILTWQFQVLAFSNTHSVYVPDLLFFGDSFTDSPDRSPE FQAECMGRALKKLGVEKDCTVVGFSYGGILAFKMAKMFPDMVGAVVVTGSGMEFTESISQSGLRRLGYGSWKECLVPEKVEGLKKLLDVAAVLKPRLPAR ILNDAFEALIKHRKERVEVLEAMVIADNTFKVYPYSQKIHFIWGENDQMIEMEVARQHATEGESNIGVCRKGWPSGSDGETLPFQQAPQKLPQLLAGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	0	1
AT5G58160			actin binding (.1)		Lus10024450 [exp]	2.0	0.8796
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	2.4	0.8800
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	3.0	0.8565
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	3.5	0.8831
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	4.7	0.8801
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	8.5	0.8636
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	9.2	0.8668
AT5G58160			actin binding (.1)		Lus10007447 [exp]	9.2	0.8434
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	9.4	0.8252
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	12.4	0.8614

Compare expression of checked genes

Lus10025873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.