Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07420 564 / 0 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT5G56680 454 / 4e-153 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 427 / 2e-142 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 272 / 9e-83 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G68420 77 / 3e-17 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G26870 78 / 8e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 72 / 5e-13 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT5G38750 52 / 5e-08 asparaginyl-tRNA synthetase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038228 [exp] 585 / 0 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10032704 [exp] 472 / 9e-160 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 401 / 6e-133 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10007470 [exp] 243 / 2e-71 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 239 / 4e-71 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10008180 [exp] 202 / 3e-61 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 82 / 7e-16 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 78 / 7e-15 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 53 / 5e-08 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249700 [exp] 687 / 0 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G153900 [exp] 476 / 1e-161 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 464 / 7e-157 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 278 / 3e-85 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.007G129800 [exp] 275 / 7e-84 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G085400 [exp] 71 / 1e-12 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10025874 pacid=23177558 polypeptide=Lus10025874 locus=Lus10025874.g ID=Lus10025874.BGIv1.0 annot-version=v1.0 ATGGAGCCCAAAGCAACCATTCAACTAATCCAAGATCCCAATGTTACCCCTCACGACCTTCCCAAATCAACCACCGTTGAAGAACATCACTCCCATGCCC AATCCCTCCCACCCCCGCTCAGCTATTCCAACCGCGTCCTTCTCAAAACCATACTAGACCGGACTGGCGGCGGGGAAGAATTTCTAGGCCAAAAGATTGT CATCGGAGGCTGGGTCAGATCTTCCAAGCATGTTATCAAAGAGCCCCATTCTCCACCTCCGCCGACCCCACCCGAGTCTCAAGTTCACCACCGCCGCCTC TCCAAGACTTCTCCCCACGTCACCTGCGCCGAGATGCTCCAAGCTCGAATTCCCCTCTTCAGATCCATATACAAGATCCTAGCCGGAGGTGGCAGCGGCG GCGGTAGCTCCTCCCCTGCTCGCGCTGAAAAGCCTTCTTCCCCTGAACCAAGAATCCAGAGGCCTCCGCCGCCTTCCACCGCTTTTTTGCTCGTCAGCGA CGGCTCTTGCTCTGCAAGTCTTCAAGTTGTGGTCGATTCCTCTGTAGCCTCCCCTGATATGTTTCTCCACGCCGGAACCAGTTTATTAGTGGAAGGCCTA CTCCGTCAGCCGCATACACCCGGGAAACACCGCGTCGAGCTTCACGTAGAGAAGCTTCTCCACATCGGCACGGTGGAAAAGGACAAGTATCCCTTGTCTG TCAAACGAATCCCCCTTGAGAATCTCAGAGACGCTTCCCATTTCCGCCAACGTTCGACCACTGTGGCTTCGGTAATGAGGGTTCGGAGCGCCTTGACATT TGCAAGCCACATCTTCTTCCAGAACGGAGGATTCTTATACGTCCAGGTACCGATAATCACCGCCACGGACGCCGACGGATTCAGCAACAAGTTCCGAGTG ACGACGACTCTCTTGTCCGGAAATGAAGAGGCGGCGGCCAAGAAAGGAGGAGGAGGAGGAGACGAATTTAGCGCGAATGCTGTGAAGGCGGCGATTAGGG AGAAGAGTAATTTGGTGGAAGAGCTGAGGAAAAGCCACAGCAACAGGGAGGCATTGGCCGCGGCGATTCATGACTTGCGCAAAACGGACCAATTAGCTGC ACAGTTGCAGGCCAAAGAGCAGAGGCAACAACAGCTGAAGGCCGCATTTTCAACGCCGACTACCAAGATTAACAACGCGGCGGATGATTACTTCTCGCGG CAGGTTTATCTGACAGTATCTGGCCGGCTTCACCTCGAAAGCTACGCTTGTGCTCTGGGAAACGTCTATGCGTTTGGGCCCAGGTTTCGGGCGGATCGGA ATGTGAATCAGAAGCTGCAGGCGGCTGAGATGTGGATGTTTGAAGTTGAGATGGCTTTTTCGCAGTTGAAGGATGCGATGAACTGTGCAGAGGACCAGTT CAAGTTCATGTGCAAATGGATACTCGAGAATTGTACTGGAGACATGGGATTTATCTCGAGTCGAATTGATAAAAACTGCATTGGCCGTCTTGAGGGGATG ATTGCTACTTCATTTGAAAGGATCACATACATGGATGCAGTTGAAATTCTGAAAAAGGTGACGGAGAAGCGATTCGAGACGAGCCTGGTATGGGGTATTG ATCTCACATCAGAACATTTAAGTTATTTGGCAGATGAAATGTTTAAGAAGCCAGTGATAGTGTACAATCACCCAAGAGATGTAAGACCATTCTACGCACG CTTAAATGATGACTTGAAAACAGTAGCCACTTTCGACATGGTCGTCCCCAAGGTTGGGAAACTGATCACAGGTAGTCAAAACGAGGAGCGGATTCACATG GTTGAAACAAGGATTAAGGAGCTGGGCTTGCCAACTGCAGAATATGAGTGGTACTTGGATCTTAGGAGGCACGGTACAGTGAAGCATTCTGGTTTCAGCC TTGCCTTTGATCTCATGGTTCTCTTCGTTACTGGTCTCCCTGATGTCAGAGATGCCATCCCTTTCCCCAGAAGCGTTGGCAAAGCCAACAACTGA
AA sequence Show only first row Show all	>Lus10025874 pacid=23177558 polypeptide=Lus10025874 locus=Lus10025874.g ID=Lus10025874.BGIv1.0 annot-version=v1.0 MEPKATIQLIQDPNVTPHDLPKSTTVEEHHSHAQSLPPPLSYSNRVLLKTILDRTGGGEEFLGQKIVIGGWVRSSKHVIKEPHSPPPPTPPESQVHHRRL SKTSPHVTCAEMLQARIPLFRSIYKILAGGGSGGGSSSPARAEKPSSPEPRIQRPPPPSTAFLLVSDGSCSASLQVVVDSSVASPDMFLHAGTSLLVEGL LRQPHTPGKHRVELHVEKLLHIGTVEKDKYPLSVKRIPLENLRDASHFRQRSTTVASVMRVRSALTFASHIFFQNGGFLYVQVPIITATDADGFSNKFRV TTTLLSGNEEAAAKKGGGGGDEFSANAVKAAIREKSNLVEELRKSHSNREALAAAIHDLRKTDQLAAQLQAKEQRQQQLKAAFSTPTTKINNAADDYFSR QVYLTVSGRLHLESYACALGNVYAFGPRFRADRNVNQKLQAAEMWMFEVEMAFSQLKDAMNCAEDQFKFMCKWILENCTGDMGFISSRIDKNCIGRLEGM IATSFERITYMDAVEILKKVTEKRFETSLVWGIDLTSEHLSYLADEMFKKPVIVYNHPRDVRPFYARLNDDLKTVATFDMVVPKVGKLITGSQNEERIHM VETRIKELGLPTAEYEWYLDLRRHGTVKHSGFSLAFDLMVLFVTGLPDVRDAIPFPRSVGKANN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	0	1
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	2.0	0.9643
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	2.0	0.9697
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10040258 [exp]	3.9	0.9218
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	4.2	0.9592
AT5G67550			unknown protein		Lus10011544 [exp]	4.5	0.9559
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	4.7	0.9270
AT3G10680			HSP20-like chaperones superfam...		Lus10033409 [exp]	5.1	0.9149
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	6.0	0.9485
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	8.1	0.9513
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	10.4	0.9289

Compare expression of checked genes

Lus10025874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.