Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 244 / 6e-81 receptor-like protein kinase-related family protein (.1) AT3G22060 139 / 4e-40 Receptor-like protein kinase-related family protein (.1) AT4G05200 114 / 9e-29 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT2G31620 109 / 1e-28 Receptor-like protein kinase-related family protein (.1) AT3G58310 109 / 1e-28 Domain of unknown function (DUF26) (.1) AT4G23180 104 / 3e-25 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21230 103 / 5e-25 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G38830 100 / 1e-23 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23160 99 / 5e-23 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT3G21990 93 / 2e-22 Domain of unknown function (DUF26) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038227 [exp] 437 / 6e-157 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10027145 [exp] 138 / 2e-39 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10018377 [exp] 120 / 1e-30 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018380 [exp] 115 / 1e-29 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 102 / 1e-24 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 100 / 9e-24 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007631 [exp] 99 / 3e-23 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 96 / 3e-22 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 96 / 3e-22 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249600 [exp] 217 / 2e-70 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 155 / 1e-46 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.007G120700 [exp] 152 / 4e-45 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 149 / 6e-44 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 149 / 7e-44 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 148 / 1e-43 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 142 / 3e-41 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G039966 [exp] 141 / 6e-41 AT3G22060 273 / 5e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G040300 [exp] 140 / 1e-40 AT3G22060 226 / 3e-74 Receptor-like protein kinase-related family protein (.1) Potri.017G040049 [exp] 140 / 3e-40 AT3G22060 221 / 9e-72 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10025875 pacid=23177535 polypeptide=Lus10025875 locus=Lus10025875.g ID=Lus10025875.BGIv1.0 annot-version=v1.0 ATGATGAAGATGAACACACTCTCTGCCATTTCCTTCTTCCTTCTCCTCCCCATCTTACTAGTTACAGCAACAGACCCACTCGGAGAATTCTGCAACAAGG ACGCCACCAAACTCAATCCTCAATCCTCCAACAACCTCGAAAAACTCCTTTCCCAACTCGCCTCCAACACTTCCTCTTCCGGCTACTCTGCCGTCTCCTC CGGAACAGGCTCCGACCAACTCCACGGCCTGGCACAGTGCAGGGGAGACGTCAGCACCGGCGACTGCTCCACCTGCATCCGAGAAGCCGCTGGCGAGATC ACTCGCCGGTGCACTAACCTACCCGATGCCAGAATCTGGTACGACGACTGCTTCTTGAGATACAGCAAGGACAACTTTGTCGGCAAGCTCAGCTCTTCAT ATGCTCTGTTTTACTACAATGTCGAGAACGTAACCGACCCGGATTTCTTCAACAATAAGCTCGGAGAGTTGGTGGATGGGATCCGATCACAAGCTGTCAA ACCGCAGAGTAAAGGGATTGGGAAAGGTCAGACCAAGTTGTCGTCTTTCATCACGCTTTATGCTCTGGCACAGTGCACCAGGGAATTGGCTGCCATTGAC TGTGCTCAGTGCCTTTCAATTGCTGTTGGAAACTTCCCAACTATTTGTAACAATAAAAAAGGGTGCAGGGCTCTGTATGACGGCTGCTATGTTCGATATG AACTCTATCCTTTCTTTTTCCCTCTCGATTCCAGCAATTCCGTGGCTGCAGTTTCTGCTGCTACTGCTTCAGTTTCCGTAGCGATTCGTTCTTAG
AA sequence Show only first row Show all	>Lus10025875 pacid=23177535 polypeptide=Lus10025875 locus=Lus10025875.g ID=Lus10025875.BGIv1.0 annot-version=v1.0 MMKMNTLSAISFFLLLPILLVTATDPLGEFCNKDATKLNPQSSNNLEKLLSQLASNTSSSGYSAVSSGTGSDQLHGLAQCRGDVSTGDCSTCIREAAGEI TRRCTNLPDARIWYDDCFLRYSKDNFVGKLSSSYALFYYNVENVTDPDFFNNKLGELVDGIRSQAVKPQSKGIGKGQTKLSSFITLYALAQCTRELAAID CAQCLSIAVGNFPTICNNKKGCRALYDGCYVRYELYPFFFPLDSSNSVAAVSAATASVSVAIRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	1.7	0.9591
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	2.6	0.9436
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	2.8	0.9508
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	3.0	0.9509
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	3.3	0.9338
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	4.1	0.9228
					Lus10021406 [exp]	4.5	0.9566
AT1G76600			unknown protein		Lus10036322 [exp]	5.5	0.8685
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	5.7	0.9400
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	6.2	0.9308

Compare expression of checked genes

Lus10025875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.