Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) AT4G12980 377 / 2e-130 Auxin-responsive family protein (.1) AT5G47530 293 / 2e-97 Auxin-responsive family protein (.1) AT4G17280 279 / 5e-92 Auxin-responsive family protein (.1) AT5G35735 276 / 1e-90 Auxin-responsive family protein (.1) AT3G59070 208 / 2e-63 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 169 / 2e-49 Auxin-responsive family protein (.1) AT3G07570 140 / 2e-38 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 117 / 7e-30 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 106 / 7e-27 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038225 [exp] 429 / 3e-153 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 303 / 5e-101 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 298 / 4e-99 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 289 / 9e-96 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10006398 [exp] 256 / 5e-84 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10017564 [exp] 254 / 4e-82 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 244 / 6e-78 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10000915 [exp] 188 / 4e-56 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 172 / 3e-50 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249300 [exp] 440 / 3e-155 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.010G156600 [exp] 290 / 3e-96 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 290 / 4e-96 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 289 / 8e-96 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 278 / 1e-91 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 269 / 5e-88 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 249 / 4e-80 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 212 / 5e-66 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 212 / 7e-66 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 206 / 8e-64 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10025877 pacid=23177593 polypeptide=Lus10025877 locus=Lus10025877.g ID=Lus10025877.BGIv1.0 annot-version=v1.0 ATGGCCGGTGCTCAGGCTCTCGTGGCTTACAAGGACTCCAAAGGAGTTTTCACCGTCAAAACCTACAACATCAGCTCCTACACCCCCGCCTCCGTGGTTC AGTCCAAGCTAGATTTCCAAGTCTGGGATGCACGCGCCGAGGAAGAAGAAGATAGCCGCGGCCGAATTGGTGTGAGGATTTTCGCTAAAATCAAGCTGCC GGCGGATTTAGCGGCGGCGGGGACGGTGAACCATGTCTGGCAAGTAGGGCCCAGTGTGGACGCGAAAGGTGTTCTGATGCCCCACGCCATGGTGACGGCC AATTTGAACGCTAAGGGGGCTCTTGATTTGAAAAAAGGGCAGAGTGTTGCCGTCGCCGGGGGAGGAAACTCCGGCCTAAAGAAAAAGAACATTCACGGTG TTTTGAATGCGGTGAGCTGGGGGATTCTGTTTCCGGTGGGAGCGATCATCGCTAGGTACGTGAGAAGTTTCCCGTCGGCGGATCCAACTTGGTTTTATCT CCATGCTGGCTGTCAAGTTTCCGGCTACGCAATCGGAGTATCAGGATGGGCAACCGGGTTGAAGCTGGGAAGTCAATCCAAAGGGATTCAGTTCACAGGT CACCGTAACATTGGAATTGCTCTTTTCGCAATAGCAACTCTCCAGATGTTTGCGCTGTTCTTGAGACCGTCGAAAGAGCATAAGTTGAGAAAGTACTGGA ATGTGTACCACCATGGAGCTGGATACGCCATACTTGTGCTTGGATTACTGAACGTGTTCAAAGGTCTAGACATGTTGCAGCCGGAGAGCAAGTGGAGGAC GGCATATATAGCTGTGATCTCTGCACTGGGTGGAATCGCGCTGTTGTTGGAAATCGTCACTTGGGTTATGGTTCTGAGGAGGAAATCCAACCAATCCACC AAACCTTATGATGGAGGATACAGCAACAATGGCAATAGCAGGCAGCAACAACCCCTCACTTCTTAG
AA sequence Show only first row Show all	>Lus10025877 pacid=23177593 polypeptide=Lus10025877 locus=Lus10025877.g ID=Lus10025877.BGIv1.0 annot-version=v1.0 MAGAQALVAYKDSKGVFTVKTYNISSYTPASVVQSKLDFQVWDARAEEEEDSRGRIGVRIFAKIKLPADLAAAGTVNHVWQVGPSVDAKGVLMPHAMVTA NLNAKGALDLKKGQSVAVAGGGNSGLKKKNIHGVLNAVSWGILFPVGAIIARYVRSFPSADPTWFYLHAGCQVSGYAIGVSGWATGLKLGSQSKGIQFTG HRNIGIALFAIATLQMFALFLRPSKEHKLRKYWNVYHHGAGYAILVLGLLNVFKGLDMLQPESKWRTAYIAVISALGGIALLLEIVTWVMVLRRKSNQST KPYDGGYSNNGNSRQQQPLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	1.7	0.9808
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	2.0	0.9741
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	3.9	0.9676
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	5.7	0.9616
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	7.5	0.9687
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036111 [exp]	7.7	0.9595
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	9.5	0.9660
AT2G41610			unknown protein		Lus10030172 [exp]	9.8	0.9681
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	9.9	0.9491
AT5G61340			unknown protein		Lus10034727 [exp]	14.7	0.9631

Compare expression of checked genes

Lus10025877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.