Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07390 163 / 2e-49 AIR12 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1) AT3G25290 145 / 4e-41 Auxin-responsive family protein (.1.2) AT4G12980 140 / 2e-39 Auxin-responsive family protein (.1) AT5G47530 104 / 5e-26 Auxin-responsive family protein (.1) AT5G35735 100 / 2e-24 Auxin-responsive family protein (.1) AT5G48750 95 / 3e-23 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 97 / 5e-23 Auxin-responsive family protein (.1) AT3G59070 92 / 3e-21 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 72 / 2e-14 Auxin-responsive family protein (.1) AT1G36580 41 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038224 [exp] 352 / 6e-124 AT3G07390 182 / 7e-57 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1) Lus10002274 [exp] 106 / 2e-26 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 103 / 1e-25 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10012350 [exp] 102 / 6e-25 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10025878 [exp] 89 / 2e-22 AT3G25290 88 / 8e-22 Auxin-responsive family protein (.1.2) Lus10010498 [exp] 87 / 2e-19 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10017564 [exp] 80 / 6e-17 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10025877 [exp] 73 / 8e-15 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10001736 [exp] 64 / 2e-11 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249200 [exp] 222 / 1e-72 AT3G07390 158 / 3e-47 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1) Potri.002G249300 [exp] 143 / 2e-40 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G096400 [exp] 119 / 3e-31 AT5G47530 309 / 2e-102 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 115 / 5e-30 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 115 / 6e-30 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 114 / 1e-29 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 114 / 2e-29 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 106 / 2e-26 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 105 / 3e-26 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 105 / 3e-26 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10025879 pacid=23177502 polypeptide=Lus10025879 locus=Lus10025879.g ID=Lus10025879.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCCTTCTCTTCTTGCCTCGCCATTTCCATCTCTCTGCTACTCATCATCCCTGCACATTCCCTCACCTCCCCCTGCGATCAGAAATTCAAAA ACAACAAAATCTACGCCAATTGCACTTCCCTCCCTGCTCTCTCCTCCATCCTACACTATACCTTCAACTCCACCAATTCCTCCCTCTCCGTCGCCTTCCT CGCCGCCCCCCCCCCCCCCACCGGCTGGGTCGCCTGGGGAATCAACCCTAACGGCACCGGAATGGCCGGCGCTCAGGCTCTCGTCGCCCTCCCCGGCGCC GGCGGAAGCCTCGTCGTCAAGACCTTCAACCTCATCTCCTACGGCAGCATCAAGGAGGAGAAGCTCTCCTTCGACGTCTGGGATCTCGAAGTCGAGTCCA TGAACGGCACCACCGCCATTTTCGCCTCCGTCAAGATCCCCGCCGGAGCCGAGAAGGTGAACCACATCTGGCAGGTCGGCGCCGCGGTTAACAAAGGGAG TCCTGGTAAGCACGAGTTTGCCCCCTCAAATCTGGCTGTGAAGGAGACTCTTCAGTTGACCGGTAACCCCGCTCCTGCTCCCGGTTCTTCTCCGGCACCG GCTAGCGGGTCTCCCGCACCTGCTAGCGGGTCCTGTTCGGATGATGGCACCAGTGGTGGTTACAGTTACAGGGGAAGGGAGATGAAGGTTGGATTGTACG GTGGGGTGGCGTTGGTTATTCTGGCTGGTTTGACCATTGGGTTGTAA
AA sequence Show only first row Show all	>Lus10025879 pacid=23177502 polypeptide=Lus10025879 locus=Lus10025879.g ID=Lus10025879.BGIv1.0 annot-version=v1.0 MASPFSSCLAISISLLLIIPAHSLTSPCDQKFKNNKIYANCTSLPALSSILHYTFNSTNSSLSVAFLAAPPPPTGWVAWGINPNGTGMAGAQALVALPGA GGSLVVKTFNLISYGSIKEEKLSFDVWDLEVESMNGTTAIFASVKIPAGAEKVNHIWQVGAAVNKGSPGKHEFAPSNLAVKETLQLTGNPAPAPGSSPAP ASGSPAPASGSCSDDGTSGGYSYRGREMKVGLYGGVALVILAGLTIGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	0	1
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	3.0	0.9659
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	6.0	0.9473
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	6.5	0.9604
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	6.6	0.9510
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	6.6	0.9455
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	7.2	0.9415
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	9.2	0.9405
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	11.0	0.9510
AT2G41610			unknown protein		Lus10030172 [exp]	12.7	0.9551
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	12.7	0.9303

Compare expression of checked genes

Lus10025879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.