Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 642 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 634 / 0 ATCEL2 cellulase 2 (.1) AT1G23210 519 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G70710 515 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G71380 503 / 2e-176 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 484 / 6e-169 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39010 464 / 4e-161 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G23560 447 / 1e-154 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 438 / 3e-151 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G39000 435 / 7e-150 ATGH9B17 glycosyl hydrolase 9B17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038223 [exp] 877 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10008208 [exp] 661 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 511 / 2e-179 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10013418 [exp] 508 / 3e-179 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001666 [exp] 506 / 1e-177 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 490 / 5e-171 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 486 / 2e-169 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10034199 [exp] 485 / 2e-169 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10002930 [exp] 480 / 2e-167 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 656 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 655 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 556 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 520 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.008G132700 [exp] 517 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 509 / 8e-179 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 504 / 8e-177 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G127900 [exp] 488 / 2e-170 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.009G123900 [exp] 487 / 4e-170 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G128000 [exp] 461 / 7e-160 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10025880 pacid=23177488 polypeptide=Lus10025880 locus=Lus10025880.g ID=Lus10025880.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTCCACCGTATTATTACTAATTCTTCCCACTCTCATTACCCTTTCTCTCTTCTGTTTTCTCACCAGTGCCCACCCTGTTTCTCGACACA ATTACAAAGATGCCCTTGCTAAATCGATCCTGTTCTTCGAAGGGCAGAGGTCCGGGAAGCTCCCGCACAGCCAGAGGATGAAATGGAGGGGGAACTCCGG CTTATCCGACGGCTCCACCGCCAACGTCAACCTGGTCGGAGGGTACTACGATGCTGGCGACAATGTCAAATTCGGTTTCCCGATGGCATTCACCACCACA ATGCTGTCTTGGAGCGTGATTGAATTTGGCGGGATGATGAAAGACGAATTGCCACATGCTAAACAGGCAATCCGTTGGGCCACCGATTACTTGCTCAAAG CGACTAATCATCCCGACACCATCTACGTCCAGGTGGGAGATGCCAACGAGGACCACGCCTGTTGGGAAAGGCCGGAGGACATGGACACTCATCGTACCGT CTACAAGATCGATAAGAACACCCCCGGCACCGAAGTGGCAGGGGAAACTCAAGTTTGTCCATTTTATTGTTCCTACTCAGGTTATGAGGATGAGCTGCTC TGGGCTGCGGCCTGGCTCCACAGGGCCACTAAACTTAGCACCTATCTCAACTACGTCAAGGCCAATGCCCAGAGCCTCGGGGCGGACCAATATGACAACA CGTTTGGTTGGGACAACAAGCACGTAGGAGCCAGGATCCTGCTCTCGAGGACTTTTCTTCTCCGTAAGCATGCTGATTTCGAGGACTTTAAGGACCATTC TGACAATTTCGTTTGTTCGATTGTCCCCGGTGTGCCTAACTATGCCTCTCAATACACACCGGGAGGGCTACTTTACAAATTGGGGGACGGGAATATGCAG TACGTGACATCGACTTCGTTCTTGCTCTTGGCGTACGCTAAGTACTTGGCCGTCTCAGGGAAGTCTGTAAATTGCGGAGGTACAGTTGTCCATGCTGGGA AGCTGAGGTCGATTGCTAAGCGGCAAGTGGACTATTTACTAGGGGAGAATCCGTTGAAGATGTCTTATATGGTTGGGTATGGGAAGAAGTACCCACTGAG GATCCACCATAGAGGGTCGTCTTTGCCGTCTATCCGGGTCAAACCAGATCGAATAGGGTGCTCGTCCGGGTACGGGGTGATGTACTCACAGTCACCCAAT CCAAATGTGCTTGTCGGTGCGGTTGTGGGCGGACCTGATCAGGGCGATGGATTTTCAGATCAGAGGAACGATTATGAACATTCAGAGCCGGCCACTTATA TCAATGCACCATTGGTCGGCTCGTTGGCTTATCTTGCTCATGCATTTGGACAGATTTAA
AA sequence Show only first row Show all	>Lus10025880 pacid=23177488 polypeptide=Lus10025880 locus=Lus10025880.g ID=Lus10025880.BGIv1.0 annot-version=v1.0 MASSSTVLLLILPTLITLSLFCFLTSAHPVSRHNYKDALAKSILFFEGQRSGKLPHSQRMKWRGNSGLSDGSTANVNLVGGYYDAGDNVKFGFPMAFTTT MLSWSVIEFGGMMKDELPHAKQAIRWATDYLLKATNHPDTIYVQVGDANEDHACWERPEDMDTHRTVYKIDKNTPGTEVAGETQVCPFYCSYSGYEDELL WAAAWLHRATKLSTYLNYVKANAQSLGADQYDNTFGWDNKHVGARILLSRTFLLRKHADFEDFKDHSDNFVCSIVPGVPNYASQYTPGGLLYKLGDGNMQ YVTSTSFLLLAYAKYLAVSGKSVNCGGTVVHAGKLRSIAKRQVDYLLGENPLKMSYMVGYGKKYPLRIHHRGSSLPSIRVKPDRIGCSSGYGVMYSQSPN PNVLVGAVVGGPDQGDGFSDQRNDYEHSEPATYINAPLVGSLAYLAHAFGQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	0	1
AT2G36220			unknown protein		Lus10022709 [exp]	2.8	0.8239
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	4.0	0.8306
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	8.0	0.8105
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	10.4	0.8212
AT1G45688			unknown protein		Lus10010232 [exp]	11.0	0.8061
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	14.5	0.7804
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	15.4	0.7391
AT2G05710		ACO3	aconitase 3 (.1)		Lus10031561 [exp]	15.9	0.7297
AT4G31250			Leucine-rich repeat protein ki...		Lus10020183 [exp]	16.9	0.8072
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	21.2	0.7996

Compare expression of checked genes

Lus10025880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.