Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25280 515 / 2e-179 Major facilitator superfamily protein (.1) AT3G25260 495 / 1e-171 Major facilitator superfamily protein (.1) AT1G27040 390 / 8e-130 Major facilitator superfamily protein (.1.2) AT1G69850 387 / 2e-128 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G62730 378 / 4e-125 Major facilitator superfamily protein (.1) AT1G59740 318 / 1e-101 Major facilitator superfamily protein (.1) AT1G33440 297 / 1e-93 Major facilitator superfamily protein (.1) AT3G54140 290 / 5e-91 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 266 / 6e-82 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 260 / 1e-79 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033101 [exp] 413 / 1e-138 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10036710 [exp] 378 / 5e-125 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 376 / 2e-124 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 375 / 7e-124 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 375 / 8e-124 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10032876 [exp] 334 / 8e-108 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10015240 [exp] 334 / 8e-108 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10006477 [exp] 333 / 1e-107 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 323 / 3e-104 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249100 [exp] 610 / 0 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.012G070700 [exp] 405 / 2e-135 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.010G034300 [exp] 377 / 1e-124 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.004G229000 [exp] 332 / 8e-107 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 328 / 1e-105 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 318 / 1e-101 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 318 / 2e-101 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 315 / 1e-100 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.001G272900 [exp] 301 / 1e-95 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 299 / 3e-94 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10025881 pacid=23177541 polypeptide=Lus10025881 locus=Lus10025881.g ID=Lus10025881.BGIv1.0 annot-version=v1.0 ATGGAGATTAATGCCACAGCTGGGGCTGCTGGGTGTGTAGTCAGGGGAGAGGGAGGAGAGTTTGAAGGAGTTGGGAAAGCAGCAGAGTACGTCGATTGGA GAAGCCAGACTGCCAATCCTAAGAAGCACGGCGGCTTTCCACCTGCAGCCATCACCTGTGTGGTGGAGGCGTTAGAGAACATGGTATTCCTGAGTAACGC CACAAATTTCGTGGCTTATTTCATAAAGTCAATGCACTACACCACCGCTCACGCCGCCAACATGGTCACCAATTTCATGGCCACTTCTTTCCTCCTCACC GTACTCGGCGGCTTCATCACCGACTCTTTCCTCAACAGGTTCTGGACCTTCATCCTCTCCTGCACCACCGAGCTTCTGGGGATAACGGTGCTGACGATTC AAGCCGGGAATAGCGGGCTGAAACCGGCGGCAAAGGAGACGCCGTCGGCAGGTGAGGCGGCAATGCTGTACTGCGGGCTGTACGCAATTGCGGCGGGATT CGGAGGGATTAAGGCATCACTGCCAGCGCATGGGGCCGACCAGCTGGATCATAGAAACCAGGCCCACATATCAGCGTTCTTTAACTGGTTCTTTTTTGCA CTGTGCGTTGGGGGGCTGATGGCGTCGACAGTGATGATATGGGTCCAGGAGAACTTGGGCTGGAATTGGGGGTTCAGGTTATCACTCGTTGCTCTCACAC TGGCACTCTGCCTTTTCGCCATTGGCTTCCCTTTTTACAGGTTTAAACGCCCTACTGGTAGCCCAATCACTCGAATCCTAAAGGTTTTGGTCTCTGCAAT TCGTAACAGGGAAACCTCTGTTGTGATCAACGATGAAGCTAACGGAATTCTGCACAAAAAGTTTCTGGATAAAGCAATAATGGGTGATGCTGATCCGGAA CAAGTCGAGGAAACAAGATCCTTTCTACGCCTGCTGCCAATCTTCGGCGGCACAATCATGATGAACTGCTGCCTTGCCCAGCTCCAGACATTCTCAGTGG AGCAAGGAAGCATCATGGACAGGAACATCCGCGGCTTCCTAATCCCAACACAATCAATGTCGGTCTTCCCGCTCGTCGTCATGATCGCTTCCATCCCGTT CTACGAGCATTTCCTCAAGACGTTCGGCCGAGGCAGAGTCCCCACACGGTTAGACATCTACCAGCAGCCGCTCAAGAGGATCGGACTAGGCCTGGCACTT GCCTCCGTGTCCATGGCTGTGGCTTCATCCGTCGAGCATAAAAGACGGACAGCTGAGGCTCAGCTGTCTGTCTTTTGGCTGAGCTGGCAATATCTTTTCT TAGGGGTATCGGATATGCTGACCCTTGGAGGGATGCTTGAGTTTTTCTACACGGAGGCGCCTAGTAGCATGAGGAGCATGTGTACCGCATTGGCCTGGGC GTCGACTTCAATGGGTTACTTCCTCAGCTCGGTTCTGGTCACTTTAATTAACGATGTAACGGGGAGATTCGGTACCCAGTGGCTCGGTGGTCATGATTTG AATCGGAACCGGTTGGATCTGTTCTATGCACTTCTTTGCATCCTCAATTCTGTTAATTTGGTGAATTATATGTTCTGGGCTAAGAGGTACTAA
AA sequence Show only first row Show all	>Lus10025881 pacid=23177541 polypeptide=Lus10025881 locus=Lus10025881.g ID=Lus10025881.BGIv1.0 annot-version=v1.0 MEINATAGAAGCVVRGEGGEFEGVGKAAEYVDWRSQTANPKKHGGFPPAAITCVVEALENMVFLSNATNFVAYFIKSMHYTTAHAANMVTNFMATSFLLT VLGGFITDSFLNRFWTFILSCTTELLGITVLTIQAGNSGLKPAAKETPSAGEAAMLYCGLYAIAAGFGGIKASLPAHGADQLDHRNQAHISAFFNWFFFA LCVGGLMASTVMIWVQENLGWNWGFRLSLVALTLALCLFAIGFPFYRFKRPTGSPITRILKVLVSAIRNRETSVVINDEANGILHKKFLDKAIMGDADPE QVEETRSFLRLLPIFGGTIMMNCCLAQLQTFSVEQGSIMDRNIRGFLIPTQSMSVFPLVVMIASIPFYEHFLKTFGRGRVPTRLDIYQQPLKRIGLGLAL ASVSMAVASSVEHKRRTAEAQLSVFWLSWQYLFLGVSDMLTLGGMLEFFYTEAPSSMRSMCTALAWASTSMGYFLSSVLVTLINDVTGRFGTQWLGGHDL NRNRLDLFYALLCILNSVNLVNYMFWAKRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	0	1
AT3G19940			Major facilitator superfamily ...		Lus10028729 [exp]	1.7	0.8693
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10019645 [exp]	4.2	0.7806
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	4.7	0.8463
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028014 [exp]	7.5	0.6928
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10028819 [exp]	8.8	0.6774
					Lus10029509 [exp]	9.2	0.7101
AT2G15220			Plant basic secretory protein ...		Lus10013863 [exp]	9.8	0.6845
					Lus10041371 [exp]	11.9	0.8138
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	13.4	0.7679
AT4G39510		CYP96A12	"cytochrome P450, family 96, s...		Lus10018159 [exp]	13.9	0.6994

Compare expression of checked genes

Lus10025881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.