Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25250 402 / 8e-138 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 390 / 5e-134 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 257 / 1e-81 Protein kinase superfamily protein (.1) AT3G20830 248 / 5e-78 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G47750 202 / 1e-58 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 200 / 3e-58 AGC1.7 AGC kinase 1.7 (.1.2) AT5G58140 204 / 1e-57 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G12690 199 / 1e-57 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G55910 194 / 1e-56 D6PK D6 protein kinase (.1) AT2G36350 200 / 3e-56 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038221 [exp] 788 / 0 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10009592 [exp] 473 / 2e-165 AT3G25250 429 / 7e-149 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020411 [exp] 359 / 7e-120 AT3G25250 318 / 3e-104 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031830 [exp] 232 / 8e-72 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10016629 [exp] 202 / 2e-58 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 199 / 1e-57 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10020572 [exp] 196 / 3e-57 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10039105 [exp] 197 / 6e-57 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 195 / 1e-56 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248900 [exp] 416 / 3e-143 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.003G205800 [exp] 251 / 6e-79 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 246 / 5e-77 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G024000 [exp] 200 / 4e-59 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 207 / 5e-59 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.010G236200 [exp] 199 / 8e-59 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 204 / 5e-58 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.015G093400 [exp] 196 / 2e-57 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.014G047500 [exp] 199 / 8e-57 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 197 / 8e-57 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025882 pacid=23177610 polypeptide=Lus10025882 locus=Lus10025882.g ID=Lus10025882.BGIv1.0 annot-version=v1.0 ATGAACGATCGCCCCAATCAAACTGACCACACCATCGTCCCAATCCTAGACCTCGACACCCTCTCCGTCATTTCTCCCGTCGGCCGCGGAGCCAAAGGCG TCGCGTTTCTCGTCAGGAACAAGCACTTCGACGAGTCATGGGCTCTCAAAGTCATCCTCCGCGATTTAGTCGAGAAGAAGAGCTCCGCCTCCGGGAGCGA GTACAAGCGTATCTGGTTAGAACAGCGGGTCCTCAGCCGCTTCAAGCACCCGCTTCTCCCTCGCCTCCGTGGCATTCTCAGCACCGATAAGATCGTCACT TACGCCATCGATTACTGCCCTGGCCGTGACCTTAATCACCTCCGTAAGCAACAGACCGAGAATATGTTCTCCCCTGACATCATCAGATTTTACGCGGCGG AATTGGTTCTGGCGTTGGAGTACCTCCACAACAATGGCATCGCTTACAGAGACTTGAAGCCTGAGAACATATTGATTCAAGAGAACGGCCACATTATGCT CGTAGATTTCGACCTTTCCACCGAGCTCCCTCCTCCCACACCACGCAAACCTCTGCCGAAGAAGTTTCCTCCCGCCGTAGCAAGATCGAATTCAAACCGT CGGAAGCGGGCATTGAGCTTGCAGCTCTTCTGCAAGTGCTCTTCGGGGATCACGCCGGAGGAATGCGTCGTGGAGAACAACCGACCTGAGCGTCAACAGT CAATAATTCCTTCAGCTGGGAAATCGAACTCGTTCGTCGGGACGGAAGAGTACGTGGCCCCGGAGGTAATCCAGGGGTACGGCCACGACTTCTCTGTGGA TTGGTGGTCCCTCGGCGTCGTGATTTATGAGATGCTTTACGGACGGACGCCATTCAGGGGCACAAATCGGAAGGACACGTTTTACCGGATCTTGACTCAG AGCCCGGAGCTGGTCGGCGAACCGACGCCGTTGAGGGACTTAATCGGGAGACTTCTGGTGAAGGATCCTAGAGAGAGGATGACGGTGGACGAAATCAAGG GACACGAGTTCTTCAAGGGGCTGCATTGGGAATCGGTGGTTCAAGTCTCGCGGCCGCCGTACATTCCGCCGAGTGTTTGGGGAGACAAGGAAGACGATGG CAAAAATGTGAATAAGAGCATTGATGTGGAGTCTTTTGTCCAGAGAGTATTCAGCGTTAGCAGCGACAACGGCGACGGCGCGAAGGAGGCGGAAAAGAGT AAAGTACCGGACGGCGGTAGGACGGAAGTGGAGAAGAGGGAAATGGTGGAACCCACCTACCGGAATAATAATCAACTGCCTCGAGGAGGAGGTGACGATA ATCAGAATTTTGTGGTGTTCTAA
AA sequence Show only first row Show all	>Lus10025882 pacid=23177610 polypeptide=Lus10025882 locus=Lus10025882.g ID=Lus10025882.BGIv1.0 annot-version=v1.0 MNDRPNQTDHTIVPILDLDTLSVISPVGRGAKGVAFLVRNKHFDESWALKVILRDLVEKKSSASGSEYKRIWLEQRVLSRFKHPLLPRLRGILSTDKIVT YAIDYCPGRDLNHLRKQQTENMFSPDIIRFYAAELVLALEYLHNNGIAYRDLKPENILIQENGHIMLVDFDLSTELPPPTPRKPLPKKFPPAVARSNSNR RKRALSLQLFCKCSSGITPEECVVENNRPERQQSIIPSAGKSNSFVGTEEYVAPEVIQGYGHDFSVDWWSLGVVIYEMLYGRTPFRGTNRKDTFYRILTQ SPELVGEPTPLRDLIGRLLVKDPRERMTVDEIKGHEFFKGLHWESVVQVSRPPYIPPSVWGDKEDDGKNVNKSIDVESFVQRVFSVSSDNGDGAKEAEKS KVPDGGRTEVEKREMVEPTYRNNNQLPRGGGDDNQNFVVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	1.4	0.9442
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	2.0	0.9385
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	2.4	0.9452
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	4.9	0.9389
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	5.3	0.9215
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	8.8	0.9002
AT4G12070			unknown protein		Lus10031257 [exp]	8.9	0.9032
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	11.0	0.8820
					Lus10039442 [exp]	11.1	0.8963
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	12.7	0.9041

Compare expression of checked genes

Lus10025882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.