Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48545 223 / 2e-74 HINT3 histidine triad nucleotide-binding 3 (.1) AT3G56490 56 / 4e-10 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) AT1G31160 54 / 6e-09 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) AT5G58240 42 / 4e-05 FHIT FRAGILE HISTIDINE TRIAD (.1.2) AT4G16566 40 / 0.0003 HINT4 histidine triad nucleotide-binding 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038220 [exp] 363 / 1e-129 AT5G48545 216 / 7e-72 histidine triad nucleotide-binding 3 (.1) Lus10035409 [exp] 53 / 6e-09 AT3G56490 224 / 1e-76 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10031011 [exp] 52 / 1e-08 AT3G56490 228 / 2e-78 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10036217 [exp] 52 / 1e-07 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248800 [exp] 239 / 1e-80 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1) Potri.015G124700 [exp] 55 / 3e-09 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) Potri.016G023700 [exp] 52 / 3e-08 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Potri.013G161100 [exp] 40 / 0.0003 AT5G58240 149 / 8e-47 FRAGILE HISTIDINE TRIAD (.1.2) Potri.019G133200 [exp] 39 / 0.0005 AT5G58240 158 / 1e-50 FRAGILE HISTIDINE TRIAD (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10025883 pacid=23177560 polypeptide=Lus10025883 locus=Lus10025883.g ID=Lus10025883.BGIv1.0 annot-version=v1.0 ATGGATTCCCCTAGGTTATCCATTATTCGCTCCCACCTTCTACCCACCACTTCTCTTCGTATTGCTTCCCCTTCCCAATTCACTCCTTCCAATTGTTCTT CTTCTTCTGATTTTATGGCCTCCGCTGGCGATGGAAAGACCACCCAAGACTGTGTCTTTTGCTCTATTGTTCGTGGGGATTCCCCTGCTCTCAAACTTTA CGAAGATGATTTGTGCCTTTGTATTTTGGATAGAAACCCATTGAGTCATGGGCATTCTCTTATTATACCAAAGACTCATTTTTCTTGCTTGGAGTCTACC CCTCCATCTTTGATTGCAGCAATGTGTTCAAAGGCACCTTTTATTGCAAATGCTCTCATGAAGGCTAGTGGGTCTGATTCATTCAACGTACTAGTGAATA ATGGGGCTGCTGCAGGCCAAGTTATATACCATACACATATCCATATAATCCCACGCAAGACAAATGATTGCTTGTGGACAACTGAGAGTTTACCAAGATA TCCCTTAATCTTCGACCAGGAAGCTTCTCTTCTCGTTTCTTCAGTCCGAGAACAGTTGATGAATGGTTCCGGGAATTACAAGGGCGGACACGAATCTGGG CTACCTCGATGCTCTCTCTGA
AA sequence Show only first row Show all	>Lus10025883 pacid=23177560 polypeptide=Lus10025883 locus=Lus10025883.g ID=Lus10025883.BGIv1.0 annot-version=v1.0 MDSPRLSIIRSHLLPTTSLRIASPSQFTPSNCSSSSDFMASAGDGKTTQDCVFCSIVRGDSPALKLYEDDLCLCILDRNPLSHGHSLIIPKTHFSCLEST PPSLIAAMCSKAPFIANALMKASGSDSFNVLVNNGAAAGQVIYHTHIHIIPRKTNDCLWTTESLPRYPLIFDQEASLLVSSVREQLMNGSGNYKGGHESG LPRCSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	0	1
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	2.2	0.8514
AT2G35200			unknown protein		Lus10036051 [exp]	2.4	0.8325
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	3.7	0.7625
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	4.0	0.8157
AT2G36895			unknown protein		Lus10001393 [exp]	4.2	0.7948
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	4.9	0.8164
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	11.0	0.7706
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	14.0	0.7563
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10014988 [exp]	14.1	0.7756
AT1G76600			unknown protein		Lus10037249 [exp]	14.5	0.7950

Compare expression of checked genes

Lus10025883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.