Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 474 / 3e-165 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 261 / 2e-82 ARM repeat superfamily protein (.1) AT1G23030 229 / 3e-68 PUB11 ARM repeat superfamily protein (.1) AT3G46510 223 / 1e-65 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 220 / 6e-65 ATPUB14 plant U-box 14 (.1) AT1G71020 210 / 2e-62 ARM repeat superfamily protein (.1.2) AT2G28830 208 / 9e-59 AtPUB12 PLANT U-BOX 12 (.1) AT5G18330 190 / 3e-55 ARM repeat superfamily protein (.1) AT5G18340 190 / 4e-55 ARM repeat superfamily protein (.1) AT5G42340 178 / 4e-49 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038218 [exp] 835 / 0 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10020413 [exp] 530 / 0 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10009594 [exp] 526 / 0 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10037970 [exp] 241 / 1e-72 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 238 / 5e-71 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 237 / 9e-71 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 227 / 3e-67 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 223 / 2e-63 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 194 / 8e-55 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248600 [exp] 582 / 0 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 502 / 2e-176 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052500 [exp] 461 / 3e-160 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 432 / 1e-147 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.008G035700 [exp] 235 / 2e-70 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 234 / 6e-70 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 232 / 6e-69 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 228 / 1e-67 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 228 / 1e-67 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 224 / 3e-66 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10025885 pacid=23177530 polypeptide=Lus10025885 locus=Lus10025885.g ID=Lus10025885.BGIv1.0 annot-version=v1.0 ATGGCCAAGACAGCAGGGTTCGATTCCGATCCAACCCATATGGCCAGAGCCGCGGAATTGAAGAAGCAGCTCCAGAAGCTTGTCAACACTATCACCGCCG ATGACGATTGCCGCACCGACACCATCGATCAAGCTAATCAAACCCTCCTTGCCCTCAAGGAACTCAAATTCCACCGCTCCAGCAAGAAAACTTCCCCTCT TTCTTTCAACCAGCAAGACGGCGTCTCCGCCGCCTCTTGTCCCGACGAGTTCAAGTGTCCTCTTTCCAATGAATTGATGAGAGATCCTGTTATTCTTTGC ACCGGCCTGACTTATGATCGACCATTCATTGTGAAATGGTTAGAAGAAGGAAATCGTACTTGCCCAAAGACGCAACAAGTCCTCTCTCACACAAACCTCA CTCCGAATCACTTGATATGGGAGATGATATCAAACTGGTGCAAGACTCAGGGGATTGAGTTGCGGGATCCCGTTCATTACGTTAACGAAGCAGCAATAAC AGAAGCCGACCGTCACCACTTTCTCTCCTTACTCGATAAATTGTCTTCCACGCTTGCTGAACAGAAGGAAGCTGCGAGGGAGTTTCGACAGTTGACCAAA AGGAAGCCTTCATTCAGAGCCTTGTTCGGAGAATTCGACGGTGCTATTCCCCAGTTGCTCAGTCCACTCTCTAAAAGCAAAGTTGCAGATTCTGACCTTC AAGAAGATGTGATCACTACCCTCTTGAATCTGTCAATCCACGACGATAACAAGAAGATCGTGGGCGAAACCCCCAAGGCTATACAAGTTCTGATGGAAGC GCTAAGCGGTAATGCCACCATTGAAACTAGGACCAATGCTGCAGCAGCACTCTTCACATTGTCAGCTCTCGATAGCAACAAGACCCTCATTGGGAAATCC GGTGCCTTGAGCCCTCTGATAGACCTTTTAGAGGAAGGACATCCTTGGGCTATGAAAGACGCTGCGTCTGCAATTTACAATGTATGCATCTTGTACGAAA ACAGGGCGAAAGCAGTGAAGGCAGGTGCTGTGAGTGTAGTTCTGGACAAGATAAAGGCAGGTGTATTGGTAAATGAGTTGTTGGCTATCTTGGCAATGCT GTGTAGTTACCAGGGGGCTCTCATCGTGATAGGTGAAGAAGAGGAAGGAGTCGGTTGCCTGCTCCGAATAATAAGAGAGAGCACGTGCGAAAAAAGCAAG GAGAACTGTGTCGCGATTGTTCACGCAATCTGTTTTCACGATCGGAGCAAGTGTAAACAAGTGAGGGATGAAGAGAATGTGTACGGGACGATCTCTAAAC TAGCCAGGGACGGAACTTCAAGGGCCAAGAGAAAGGCAAGTGGGATACTTGACAGATTGAACAGGGCCGTCAATTTTACAAATACAGCGTGA
AA sequence Show only first row Show all	>Lus10025885 pacid=23177530 polypeptide=Lus10025885 locus=Lus10025885.g ID=Lus10025885.BGIv1.0 annot-version=v1.0 MAKTAGFDSDPTHMARAAELKKQLQKLVNTITADDDCRTDTIDQANQTLLALKELKFHRSSKKTSPLSFNQQDGVSAASCPDEFKCPLSNELMRDPVILC TGLTYDRPFIVKWLEEGNRTCPKTQQVLSHTNLTPNHLIWEMISNWCKTQGIELRDPVHYVNEAAITEADRHHFLSLLDKLSSTLAEQKEAAREFRQLTK RKPSFRALFGEFDGAIPQLLSPLSKSKVADSDLQEDVITTLLNLSIHDDNKKIVGETPKAIQVLMEALSGNATIETRTNAAAALFTLSALDSNKTLIGKS GALSPLIDLLEEGHPWAMKDAASAIYNVCILYENRAKAVKAGAVSVVLDKIKAGVLVNELLAILAMLCSYQGALIVIGEEEEGVGCLLRIIRESTCEKSK ENCVAIVHAICFHDRSKCKQVRDEENVYGTISKLARDGTSRAKRKASGILDRLNRAVNFTNTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	1.7	0.9059
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	3.5	0.9016
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	5.7	0.8915
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	6.9	0.8860
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	8.1	0.8704
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	8.4	0.8738
AT4G34950			Major facilitator superfamily ...		Lus10034491 [exp]	8.7	0.8531
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	9.5	0.8591
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10038151 [exp]	10.2	0.8276
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	11.8	0.8637

Compare expression of checked genes

Lus10025885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.