Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 258 / 1e-87 Ribosomal protein S8e family protein (.1) AT5G20290 239 / 5e-80 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003171 [exp] 276 / 6e-88 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 271 / 1e-85 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10016587 [exp] 220 / 2e-71 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 191 / 2e-61 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360500 [exp] 276 / 1e-94 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 270 / 5e-92 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 267 / 6e-91 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.017G110000 [exp] 264 / 8e-90 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Lus10025887 pacid=23177447 polypeptide=Lus10025887 locus=Lus10025887.g ID=Lus10025887.BGIv1.0 annot-version=v1.0 ATGGGTACACCGATCCTTCCCCGCTATTCCTCCATCTCAATCTCATACCCATGTATTTCCAGGGACTCTTTGCACAAGAGGCGCGCTACTGGTGGCAAGA AGAAGGTCTGGAGGAAGAAGCGAAAGTATGAGCTCGGACGTCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACTGTGAGGAGAGTGCGTGTAAGAGG AGGCAATGTGAAATGGAGAGCACTGAGGTTGGACTCGGGGAGTTTTTCATGGGGCAGCGAGTCTTACAGCCACAAGACACGTCTTCTTGATGTGGTTTAC AATGCCTCCAACAATGAACTTGTTAGGACACAGACTTTGGTGAAAGGAGCTATTATTCAAGTTGATGCAGCTCCCTTTAGGCAATGGTACCTTCAGCACT ATGGAGTTGATATTGGAAGGAAGAAGAAGACTGCAGCCAAGAAGGAAGCTACTGAGGAAGGAGATGCTGCTGCTGTTGCTCCCGAGGAAGTTAAGAAGAG CAAGCATGTTGAGAGGAAGATAGAAAACCGGCAGAAAGACCGCAAGCTGGATCCCCACATTGAAGAGCAGTTCAGTGGCGGTAGATTGTTGGCTTGCATT TCTTCTCGACCTGGTCAATGTGGTAGAGCAGATGGGTACATCTTGGAAGGTAAGGAGCTCGAGTTCTACATGAAGAAACTCCAGAGGAAGAAGGGCAAGG GTGCTGGTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10025887 pacid=23177447 polypeptide=Lus10025887 locus=Lus10025887.g ID=Lus10025887.BGIv1.0 annot-version=v1.0 MGTPILPRYSSISISYPCISRDSLHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDSGSFSWGSESYSHKTRLLDVVY NASNNELVRTQTLVKGAIIQVDAAPFRQWYLQHYGVDIGRKKKTAAKKEATEEGDAAAVAPEEVKKSKHVERKIENRQKDRKLDPHIEEQFSGGRLLACI SSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	0	1
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	1.0	0.9404
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	2.4	0.9369
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	3.2	0.9093
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	3.5	0.9367
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	4.5	0.8784
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	5.7	0.8908
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	6.0	0.8896
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	6.0	0.9112
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	6.9	0.8565
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	7.3	0.9010

Compare expression of checked genes

Lus10025887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.