Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25230 806 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 796 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G54010 189 / 3e-52 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 156 / 6e-45 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 127 / 6e-32 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 107 / 5e-27 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 99 / 3e-24 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G55520 92 / 2e-21 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 83 / 1e-16 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G64350 72 / 3e-15 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038216 [exp] 1028 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 902 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 897 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10022603 [exp] 180 / 3e-49 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 170 / 2e-45 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10029505 [exp] 116 / 8e-29 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025889 [exp] 107 / 3e-27 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 104 / 4e-26 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 103 / 7e-26 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 873 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 804 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 547 / 0 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 533 / 0 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 194 / 3e-54 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.009G059200 [exp] 119 / 2e-29 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 119 / 2e-29 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 103 / 6e-26 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.010G201600 [exp] 93 / 1e-21 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.008G057900 [exp] 90 / 2e-20 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10025888 pacid=23177603 polypeptide=Lus10025888 locus=Lus10025888.g ID=Lus10025888.BGIv1.0 annot-version=v1.0 ATGGAAGAAGACTTCGATCTCCCTACTGCCGGTGACGACCTCATGAATAACCTCGATCTCGGCGGCGTCGACTCCCCCGCTCTCAAAGTCGGCGAGGAGA AGGAGATCGGAAAGGAAGGCTTGAAGAAGAAACTCCTCAAGGAAGGTGAAGGCTGGGACAGTCCTGATAACGGCGATGAGGTTGAAGTTCACTACACGGG CACATTGATCGACGGCACCAAGTTCGATTCTAGTCGAGACAGAGGGACGCCGTTCAAATTCGGCCTTGGCCAGGGCCAAGTTATCAAAGGATGGGACTTG GGTATAAAGACGATGAAGAAAGGTGAAAATGCCCTTTTCACAATTCCAGCGGAATTAGCTTATGGTGCTTCTGGTTCTCCGCCAACCATTCCACCCAATG CCACCCTTCAGTTTGATGTTGAGTTGCTCTCCTGGTCTAGCGTCAAGGACATCTGTAAGGACGGTGGGATATTCAAGAAGATTGTGGTGGAGGGAGAAAA ATGGGAGAACCCAAAGGATCTTGACGAAGTCTTTGTGAAATATGAAGCTCAGCTGGAGAATGGTACTGCCGTTGCAAAGTCTGACGGAGTTGAGTTCACT GTCCAGGAGGGTCATTTCTGTCCTGCGCTATCAAAGGCTGTGAAGACGATGAAGAAAGGGGAGAAAGCCATTCTGACTGTGAAACCGCAATATGGATTTG GAGACACTGGGAAGCCTGCCTCTGCCGATGGAGGTGCTGTTCCTCCCAATGCAATCCTGCAAATAACTCTTGAATTGGTTTCTTGGAAGACTGTATCTTC TGTAACTGACGACAAGAAGATCATTAAGAAAATTCTTAAGGAAGGCGAGGGATATGAGAAGCCTAACGATGGCTCCGTTGTTCAGTTGAAATTGATTGGA AAGTTGGAAAATGGCACGGTGTTCTTGAAGAAAGGTCATGATAATGCCGACCAACTGTTTGAGTTCAGAACTGACGAAGAGCAAGTAATTGATGGGCTGG ACAGAGCCGTGATGACAATGAAGAAAGGTGAAGTGGCTTTGGTGATCATCGCCCCAGACTATGCATTTGGGAGTTGCGAGTCAAAACAGGAGCTAGCTGT TGTGCCTCCTAACTCGACTCTTCATTATGAGCTTGAGTTGGTGTCCTTCGTCAAGGATAAGGAGTCCTGGGACATGAATACGGAGGAGAAAATTGAAGCT GCTGGCAAACAGAAGGAAGAAGGAAATGCACTCTTCAAGGCAGGCAAATACGTGAGGGCATCCAAGAGATACGAGAAGGCTGTTAAATACATAGAGTATG ATACGTCTTTCAGTGACGAGGAGAAAAAGCAGTCCAAGGTATTGAAGGTCGCTTGCAATTTGAATAGTGCTGCTTGCAAGCTGAAACTGAAGGATTACAA AGCAGCGGAGAAATTGTGCACCAAGGTGTTGGAAATGGATAGCCGAAACGTGAAAGCACTCTATAGGAGAGCACAAGCTTACATCCAGTTGGCGGACTTG GAATTGGCCGAGTTTGACATCAAGAAAGCACTCGAGATTGACCCGGATAATAGAGATGTGAAGCTGGAGTACAGGACACTGAAAGAAAAAATGAGGGAGT ACAATAAGAAGGATGCCAAATTCTACGGGAATATGTTCGCCAAGATGAAAAAGCTGGGCCCTCTGGATTCCAATGTAAGCGAAAGCACTTGGTGTGTGAG TTGA
AA sequence Show only first row Show all	>Lus10025888 pacid=23177603 polypeptide=Lus10025888 locus=Lus10025888.g ID=Lus10025888.BGIv1.0 annot-version=v1.0 MEEDFDLPTAGDDLMNNLDLGGVDSPALKVGEEKEIGKEGLKKKLLKEGEGWDSPDNGDEVEVHYTGTLIDGTKFDSSRDRGTPFKFGLGQGQVIKGWDL GIKTMKKGENALFTIPAELAYGASGSPPTIPPNATLQFDVELLSWSSVKDICKDGGIFKKIVVEGEKWENPKDLDEVFVKYEAQLENGTAVAKSDGVEFT VQEGHFCPALSKAVKTMKKGEKAILTVKPQYGFGDTGKPASADGGAVPPNAILQITLELVSWKTVSSVTDDKKIIKKILKEGEGYEKPNDGSVVQLKLIG KLENGTVFLKKGHDNADQLFEFRTDEEQVIDGLDRAVMTMKKGEVALVIIAPDYAFGSCESKQELAVVPPNSTLHYELELVSFVKDKESWDMNTEEKIEA AGKQKEEGNALFKAGKYVRASKRYEKAVKYIEYDTSFSDEEKKQSKVLKVACNLNSAACKLKLKDYKAAEKLCTKVLEMDSRNVKALYRRAQAYIQLADL ELAEFDIKKALEIDPDNRDVKLEYRTLKEKMREYNKKDAKFYGNMFAKMKKLGPLDSNVSESTWCVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	2.8	0.9317
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039008 [exp]	4.6	0.9016
AT3G07150			unknown protein		Lus10011843 [exp]	5.7	0.8446
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	6.8	0.9156
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	8.6	0.8147
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10024590 [exp]	13.2	0.8314
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	14.6	0.8803
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	15.2	0.8711
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	15.7	0.8057
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	16.7	0.7943

Compare expression of checked genes

Lus10025888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.