Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25210 415 / 4e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27800 160 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27300 126 / 4e-32 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G46100 97 / 4e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 92 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G09900 91 / 6e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 91 / 8e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 90 / 2e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74750 89 / 3e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36240 88 / 4e-19 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038215 [exp] 381 / 8e-131 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038214 [exp] 229 / 3e-75 AT3G25210 119 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011029 [exp] 144 / 2e-39 AT2G27800 430 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015397 [exp] 101 / 2e-23 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 101 / 2e-23 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10009548 [exp] 96 / 1e-21 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033522 [exp] 94 / 1e-20 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020852 [exp] 93 / 1e-20 AT1G79540 665 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013972 [exp] 90 / 1e-19 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248100 [exp] 459 / 3e-162 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G093700 [exp] 144 / 2e-39 AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 114 / 5e-28 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 109 / 2e-26 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 102 / 9e-24 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G066400 [exp] 102 / 1e-23 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.005G003200 [exp] 100 / 9e-23 AT3G53700 202 / 2e-55 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 99 / 1e-22 AT4G01400 576 / 0.0 unknown protein Potri.019G019300 [exp] 97 / 5e-22 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050180 [exp] 94 / 8e-21 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025890 pacid=23177633 polypeptide=Lus10025890 locus=Lus10025890.g ID=Lus10025890.BGIv1.0 annot-version=v1.0 ATGTCTATCGCGTTACGGCGATTCCTCGGCTCATCCACCCTCACCCGCAAGATTTCTTCGCTTCCACTTTTTCCACTCCGTCACCGTCACCTCGTCTCTT CATCATCCGACGCCGATACCCAAATTCCCGACTCATCCCACGATTCAGACCTCGACATCCCTCCGCTCCCTATAACTCGAACTCGAACCCCACTCGAAAC TGGGTTCGAGTCCTGGATCCAGAAGCTAAAACCTGGGTTCACTCCGGCGGACGTGGAAGGCGCTATCCGAGCTCAGACGGATCCGGATCTCGCTCTCGAC ATCTTCCGTTGGACAGCTCAGCAGCGCAACTACAAGCACAATCATGTCACCTACCTCACCATGATCAAGACTCTCATCAATGGGCGGCGCTACCGCCACG CCGAAACCCTGGTTGAGGAAGTAATCGCCGGCGCCTGCGATATGACTGTCCCGCTCTACAATTCCGTCATTCGGTTCTGCTGCGGCCGTAAGTTTCTGTT CAACCGTGCGTTTGATGTGTACAACAAGATGCTTAGGTCGGATGACTGTAAGCCCACGCTCGAAACCTATGCTCTACTCTTCAATTCGCTGCTTAGGAGG TTTAACAAGTTGAATGTGTGCTATGTCTATTTGCACGCTGTTAAATCCATGACCAAGCAGAGGCTGTATGGATGTGAGCCGAATGGTTATAGCTACGGCT ATCTTGTCAAAGGGTTGTTTGAGAAAGGGAGACTCGGGCAAGGTTTGGGATTTTACAAGGAAATGAAGAGTAAAGGGCTGGTTCCTGGAGGGAGTACGTA CATGATTGTGATTTGTAGTCTGGCTATGGCACGGAAGCTCGATGATGCAGTGGGAGTTGTGTTTGATATGTTGAGGAACTCGCTGTCCCCGGATCAGTTG ACGTATAAGACTGTGTTGGAAGGGATGTGCAGAGATGGAAGGGGGAGTGAGGCTTTAGATCTACTTGAGCAATGGAGAAAGTTGGACGGATTGATGGGTG AGAAAGTGTACAAGGCTATGTTAAATGAAATGCATTTTCTGAGCAGAGACTAA
AA sequence Show only first row Show all	>Lus10025890 pacid=23177633 polypeptide=Lus10025890 locus=Lus10025890.g ID=Lus10025890.BGIv1.0 annot-version=v1.0 MSIALRRFLGSSTLTRKISSLPLFPLRHRHLVSSSSDADTQIPDSSHDSDLDIPPLPITRTRTPLETGFESWIQKLKPGFTPADVEGAIRAQTDPDLALD IFRWTAQQRNYKHNHVTYLTMIKTLINGRRYRHAETLVEEVIAGACDMTVPLYNSVIRFCCGRKFLFNRAFDVYNKMLRSDDCKPTLETYALLFNSLLRR FNKLNVCYVYLHAVKSMTKQRLYGCEPNGYSYGYLVKGLFEKGRLGQGLGFYKEMKSKGLVPGGSTYMIVICSLAMARKLDDAVGVVFDMLRNSLSPDQL TYKTVLEGMCRDGRGSEALDLLEQWRKLDGLMGEKVYKAMLNEMHFLSRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10025890 [exp]	0	1
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	4.0	0.8032
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	5.7	0.7998
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	7.9	0.8139
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	14.1	0.7906
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026814 [exp]	15.8	0.7700
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	23.2	0.7871
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	23.5	0.7604
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	24.6	0.7854
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	26.5	0.7806
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	27.9	0.7848

Compare expression of checked genes

Lus10025890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.