Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 534 / 7e-178 ARK3 receptor kinase 3 (.1) AT1G65790 513 / 8e-170 ARK1 receptor kinase 1 (.1) AT1G65800 508 / 1e-167 ARK2 receptor kinase 2 (.1) AT1G11330 503 / 7e-166 S-locus lectin protein kinase family protein (.1.2) AT4G21390 499 / 1e-164 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 497 / 1e-163 S-locus lectin protein kinase family protein (.1) AT1G11340 495 / 3e-162 S-locus lectin protein kinase family protein (.1) AT1G61490 472 / 1e-154 S-locus lectin protein kinase family protein (.1) AT1G11410 472 / 4e-154 S-locus lectin protein kinase family protein (.1) AT1G11300 487 / 2e-152 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033743 [exp] 1090 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 1033 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 1016 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10028782 [exp] 780 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 763 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039767 [exp] 754 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 745 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 736 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10015422 [exp] 593 / 0 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 559 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 558 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G125050 [exp] 543 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 541 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 537 / 2e-179 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.001G134900 [exp] 530 / 2e-176 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037100 [exp] 527 / 2e-175 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.001G409300 [exp] 526 / 3e-175 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 526 / 5e-175 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 525 / 1e-174 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10025891 pacid=23177554 polypeptide=Lus10025891 locus=Lus10025891.g ID=Lus10025891.BGIv1.0 annot-version=v1.0 ATGGGCTATTATCCACCATTGATGAAGCTCCTTGTTCCCTTCTTAGCTATCCTTGTTGTGTCTACACTATCCCACCTCTGTTTCGCAGCCGACAGAATCA CTGGCCGCCGAACTCTTCCCAGCAACGAAACCATCGTCTCTGCCGGCGGTGTCTTCGAGCTGGGTTTCTTCTCTCCGGCCAACTCCACTAATTCCTATGT GGGGATCTGGTACCACAATATATCACCCCGAACTGTGGTCTGGGTCGCAAACAGGAATAATCCCATTACCAATGTATCTTCATCAGAGCTTGGTGTCTGG AATGGAACCCTGATTCTTTACGTACAACACTTCATCCCAATCTGGGCTGCGGAATTTTATGCACCCTCATCGACTCTGGAAGCAGTGCTCCAGGATGATG GCAGTTTATTGTTACTCGATTCGAATTCCTCTTCTTCTTATTCGTCACAGTTGCTGTGGCAGAGCTTCGATTATCCGACGGATACGTTTCTTCCGGCACA GTACTTCGACGCCAACCAATTCGCACGCCTGGTTTCCTGGAAAAGTGACTTGGATCCAGCTGAAGGCGCATACTCGGTCCAATTAGATCCCAGAGGGACG AATTCATTGGTAACCTATTACAATAACGTTTCTATGATGTACACATTTCCTAGGACCAAATTCAGGATTAGCAATCCCAGCGACATGGGGGACTATGAGG ATGTTTATTTCGCATTCAACAATTCTAGGGTCGGGAAAAGTCGAATCGTCTTGAACAGTAATGGAATGGTTCAGGGATATTCCTGGGTGGAGAGTTCGAA AAGCTGGTCCTTAAATTGGCAGGAGCCACGAGACCACTGCCAGCTTTTTGGCTACTGTGGCCGATTTGGAAGCTGCAACAATGGCTCCACTCCTCTCTGT AGTTGTTTAACAGGGTTTGTTCCGAAATCGGAGAAAGAATGGAGCCTGGGAGACTTCTCCAAGGGTTGTCTGAGGATATCTAGGCTGGGATGCAGGGAAT CAAGAGGAGGTAATGATAATATAGTTGATGCGTATGTTACAGGATATGGGTTGCCTGATAATGGCGGGGAATTGTCAGTTGAGAATTTAAATTATTCGGT AGGTAGTGTTCAGCAATGTGAGTTGGTTTGCTCTTATAGCTGCAATTGTAGTGCTTATTCTTATCAGAGAAAAAAGTGTTCCATATGGTCTGGGGAGCTC TTTAATCTCCGTACACTTCGTAAAGATCAGTACAACCAATCTGTGTACATAAGGATTGCAGGTTCTAAGAAACCTGATGATATTATTTATGGAAAAAAGA GTCCTGATTATGTTAGGAGTAGTAGAAAGAGAGTAGTAATTGGGGCTACAGTTGGCCCTGTGGTAATTGGTTTTTTAGTTAGCCTTCTGGGTTTGTTCCT GATATTGAGAAGAAACGGTAGGCGGAAAGCGGCAGTAAACATTGATGAGATTGAGAAGAACAAGTATGGAATAGCGGGAGGGGATGACCAGAATAATACC CAGTTGTGCTTTTTCAGTTTTAAGGATGTACTGGCTGCCACTGATAACTTCGCTGAATCGAATAAGTTAGGAGAGGGTGGATTTGGCCCCGTCTACAAGG GAAAATTGGGTGATGACCAGGAAGTAGCAATGAAGAGACTTTCCAAGAAATCAGGCCAAGGCTTGGAGGAATTTATGAATGAGTTGAAACTCATTGCCAA GCTGCAGCATACCTATTTGGTCAGGCTTTTGGGATGTTGTGTTGAGAGGGAAGAAAAGATACTGATATATGAATACATGCCTAATAGGAGCCTGGACATA TTTCTCTTTGGCTCGTCTGATAATGCAAAGCTAGACTGGGGACAACGAGTAAAGATCGCAGTAGGTGTAGCTCAAGGACTGCTATACATCCACAAGTTTT CAAGAGTAAAGGTCATTCACAGGGACATGAAGGCAAGCAACGTTCTGTTGGATGCAGCAATGAATCCCAAGATATCAGACTTTGGGATGGCACGGATTTT CGGGATTGATCAGGACGAAGCAAACACCAACCGGATAGTCGGAACATACGGATATATGTCTCCTGAATACGCAATCTACGGGCAGTTCTCGGAGAAATCC GACGTGTTCAGCTTTGGAGTGTTGTTATTGGAGATAGTGACTGGAAAGAGGAACAAAGATTTCTATGACCAGGAACAAAGATTTCTTTGTTGGGTATGGG AGCTTTGGAAAGAAGGAAAAGTCGAAGAGCTGATTGATCAAGCAGTGAAGAACGGCACCTGCTGTAATCCAACTGAAGCAGTGAAGTTCATCCATGTGGG TCTTTTGTGCGTGCAAGATGCTCCAACTGACAGGCCAACAATGTCTTCAGTAACTCTGATGCTGTTGAGTAACGATCCTCAGTCGTTTCCGTCTCCTGGA GAGCCGGCCTTCAGCACCAGGAGAGCTGCTGCCGAGACTAATGATCAAATTCCAGTTAACTGTTCAAACAACCAGATCACAATGAGCTTGCCAACTGGTA GATAA
AA sequence Show only first row Show all	>Lus10025891 pacid=23177554 polypeptide=Lus10025891 locus=Lus10025891.g ID=Lus10025891.BGIv1.0 annot-version=v1.0 MGYYPPLMKLLVPFLAILVVSTLSHLCFAADRITGRRTLPSNETIVSAGGVFELGFFSPANSTNSYVGIWYHNISPRTVVWVANRNNPITNVSSSELGVW NGTLILYVQHFIPIWAAEFYAPSSTLEAVLQDDGSLLLLDSNSSSSYSSQLLWQSFDYPTDTFLPAQYFDANQFARLVSWKSDLDPAEGAYSVQLDPRGT NSLVTYYNNVSMMYTFPRTKFRISNPSDMGDYEDVYFAFNNSRVGKSRIVLNSNGMVQGYSWVESSKSWSLNWQEPRDHCQLFGYCGRFGSCNNGSTPLC SCLTGFVPKSEKEWSLGDFSKGCLRISRLGCRESRGGNDNIVDAYVTGYGLPDNGGELSVENLNYSVGSVQQCELVCSYSCNCSAYSYQRKKCSIWSGEL FNLRTLRKDQYNQSVYIRIAGSKKPDDIIYGKKSPDYVRSSRKRVVIGATVGPVVIGFLVSLLGLFLILRRNGRRKAAVNIDEIEKNKYGIAGGDDQNNT QLCFFSFKDVLAATDNFAESNKLGEGGFGPVYKGKLGDDQEVAMKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLLGCCVEREEKILIYEYMPNRSLDI FLFGSSDNAKLDWGQRVKIAVGVAQGLLYIHKFSRVKVIHRDMKASNVLLDAAMNPKISDFGMARIFGIDQDEANTNRIVGTYGYMSPEYAIYGQFSEKS DVFSFGVLLLEIVTGKRNKDFYDQEQRFLCWVWELWKEGKVEELIDQAVKNGTCCNPTEAVKFIHVGLLCVQDAPTDRPTMSSVTLMLLSNDPQSFPSPG EPAFSTRRAAAETNDQIPVNCSNNQITMSLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	0	1
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	1.0	0.9136
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	1.7	0.9101
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	2.4	0.8816
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	2.8	0.9126
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034194 [exp]	10.5	0.8194
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	11.8	0.8805
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	12.0	0.8376
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	12.6	0.8299
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	14.0	0.8960
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10018405 [exp]	14.3	0.8296

Compare expression of checked genes

Lus10025891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.