Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07320 545 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G23770 451 / 2e-156 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 434 / 5e-150 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 319 / 3e-105 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 312 / 1e-102 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 302 / 2e-98 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 271 / 5e-86 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 270 / 1e-85 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 261 / 7e-83 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 258 / 7e-81 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038211 [exp] 806 / 0 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10008881 [exp] 427 / 2e-147 AT3G23770 579 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023226 [exp] 425 / 7e-147 AT3G23770 572 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 324 / 4e-107 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 313 / 1e-102 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 304 / 4e-99 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 296 / 3e-96 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 294 / 3e-95 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 255 / 7e-80 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247900 [exp] 614 / 0 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 592 / 0 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G321900 [exp] 472 / 7e-165 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 452 / 4e-157 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 313 / 9e-103 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 306 / 5e-100 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 305 / 1e-99 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 291 / 4e-94 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 284 / 4e-91 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 267 / 7e-85 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10025892 pacid=23177682 polypeptide=Lus10025892 locus=Lus10025892.g ID=Lus10025892.BGIv1.0 annot-version=v1.0 ATGAGAGCCTGTTATGAGCGCTCTGACCGCGCCGAGATCTCCAGCAGGGCTGGCATCAACTACGGCCAGCTGGGCAACAATCTCCCCTCCCCGGCGCGCT CTGTCCACCTCATCAAATCCCTCAAAGCCAAGCGGGTCAAAATCTACGATGCCAATCCCAAAATCCTCCGAGCCTTTAAAGGAACCGACCTTCAACTCTC CATCATGGTCCCTAACGACCTCATCCCCAACGTCTCCGCTAGTCAGTCCTTCTCCGACCGATGGGTGCTCACCAACGTCGTCCCTTTCTACCCGGCCACC AAAATCCGCTACCTCTTAGTCGGCAACGAGATCCTCACGAATCCCTATATCGGGACCTGGTCCAATCTCGTCCCTGCTATGCGCCGAATCAAACTCTCCC TCCACAAATTCCGCCTCCACAAGATTAAAGTCAGCACTCCTCACGCCACTAATGTGCTGGAATCGTCCTTCCCGCCGTCTAACGGAACGTTCCGTTCCGA CGTCTCCGTTCCGATCATGAAGCCGATGCTGCAGTTCTTGAACAGGACCCGGTCCTTCTTCTTCCTCGATGTTTACCCCTTTTTCCCTTGGTCTGCGGAC CCCAAAAATATCAGATTGGATTACGCGCTTTTGCAGCCCAGTAATTTCACCTACACCGATCCAGTCTCCAAGTTGACTTATACCAACCTCTTTGACCAGA TCGTCGATGCAACTATCTTCGCTATGAAGCGCCTCGGGTACCCGGATATCCGGATCTTCATCGCCGAAACGGGCTGGCCCAGCGCTGGAGACATCGACCA AATCGGGGCTAACATCCACAACGCCGCGGTATACAACCGCGCCATGCCGGGACAAGGAACGGAGCGGCATTTCGGGCTGCTGTACCCGAACGGGACGGCG GTGTACGAGATCGATCTTAGCGGGGAGACGCCGCTTTCCGGGTACAAGAAGCCGCTACCGCCGCCGACGAACAACGAGCCGTATAAAGGAAAGCTGTGGT GCGTGGTGGGGGAGACGGCGGCGAATACGACGGCGGTGCTGGACGCGCTGTCTTGGGCTTGTTCGCAAGGGAAGGGGCTATGCGACCCGATCCAGCCTAG TGGGAAGTGCTTTAAACCCGACTCGGTGAGTTGGCACGCGAGTTATGCGTTCAGTGCATACTGGGCCGAGTTTAAAAAGGCCGGGGGCACTTGCTCTTTC AATGGGCTTGCTACTCTAACGGTCAAGGATCCAAGTGTGGGAGAGTGCAAGGTTCCAAGTGGGAGGCTGGTTTGA
AA sequence Show only first row Show all	>Lus10025892 pacid=23177682 polypeptide=Lus10025892 locus=Lus10025892.g ID=Lus10025892.BGIv1.0 annot-version=v1.0 MRACYERSDRAEISSRAGINYGQLGNNLPSPARSVHLIKSLKAKRVKIYDANPKILRAFKGTDLQLSIMVPNDLIPNVSASQSFSDRWVLTNVVPFYPAT KIRYLLVGNEILTNPYIGTWSNLVPAMRRIKLSLHKFRLHKIKVSTPHATNVLESSFPPSNGTFRSDVSVPIMKPMLQFLNRTRSFFFLDVYPFFPWSAD PKNIRLDYALLQPSNFTYTDPVSKLTYTNLFDQIVDATIFAMKRLGYPDIRIFIAETGWPSAGDIDQIGANIHNAAVYNRAMPGQGTERHFGLLYPNGTA VYEIDLSGETPLSGYKKPLPPPTNNEPYKGKLWCVVGETAANTTAVLDALSWACSQGKGLCDPIQPSGKCFKPDSVSWHASYAFSAYWAEFKKAGGTCSF NGLATLTVKDPSVGECKVPSGRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	1.0	0.9107
					Lus10041357 [exp]	1.7	0.8833
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	3.2	0.8924
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	3.5	0.8721
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	10.5	0.8449
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	10.6	0.8223
					Lus10013266 [exp]	14.5	0.7771
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	17.0	0.8440
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	19.2	0.8301
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	19.9	0.8608

Compare expression of checked genes

Lus10025892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.