Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 106 / 2e-27 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 56 / 3e-09 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT5G50960 47 / 4e-06 ATNBP35, NBP35 nucleotide binding protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024867 [exp] 150 / 4e-43 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10019468 [exp] 120 / 2e-34 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 113 / 1e-31 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10018779 [exp] 117 / 7e-31 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10019395 [exp] 57 / 1e-09 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10043252 [exp] 57 / 1e-09 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10039219 [exp] 49 / 1e-06 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10027463 [exp] 49 / 1e-06 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220500 [exp] 105 / 2e-27 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 105 / 3e-27 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 57 / 2e-09 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.001G336900 [exp] 47 / 2e-06 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01656 [flax] [poplar] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Lus10025895 pacid=23177608 polypeptide=Lus10025895 locus=Lus10025895.g ID=Lus10025895.BGIv1.0 annot-version=v1.0 ATGACTCCGGAGAAATCCAAGATTTTACTTGTTCCAGGATGTCCAGGATATCTTCTAGCCGCGAGATTGCCCATTCCATCTAACGGCTCACAATTGGCTC GATATGTGGGGTACTTCCGTCTTTTCAGATGGGTTTCTAAACCCTTATCCACAAACGGTCAAGACGACATAGCATCTGGGCTCCGTGAAAATGGAAGAAG CTTCCTCTTCGTCGAGGAAGGACCAGCCATTTCTTCGCCGCAGACGACACCGCCGGCTGGATTACAGGAGGCTGAAGATTCCTCTTTCCCAATTTCTTTA TTGATTGGAGCGGGCGTTTTCACTACTTACTTCACTTCAACGTTTCCCAGCCGGATTTCAAACTCTCATGAAAAACTTCCTGCAAAATTTGAGGAGGCTC GGCGGGGTGCGGCAGTATGTTGGGCCGTTTCCAGATCAAAGCTACGGCTCGACGGAGTTAAGGACGTCATCGCCTTTGCTTCTGGCAAAGGAGGCGTTGG AAAATCCACCACTGCTGTAAACTTGGCTGTTGCCCTTGCGAACAAGTGCAATTTGAAGGTGGGTTTGCTCGCTGCTGATGTGTATGGACCGTCTGTCCCT ATTGTGATGAAGATCAACCAACGGTGTTTAGTAGACTAG
AA sequence Show only first row Show all	>Lus10025895 pacid=23177608 polypeptide=Lus10025895 locus=Lus10025895.g ID=Lus10025895.BGIv1.0 annot-version=v1.0 MTPEKSKILLVPGCPGYLLAARLPIPSNGSQLARYVGYFRLFRWVSKPLSTNGQDDIASGLRENGRSFLFVEEGPAISSPQTTPPAGLQEAEDSSFPISL LIGAGVFTTYFTSTFPSRISNSHEKLPAKFEEARRGAAVCWAVSRSKLRLDGVKDVIAFASGKGGVGKSTTAVNLAVALANKCNLKVGLLAADVYGPSVP IVMKINQRCLVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	4.9	0.8178
AT1G51310			transferases;tRNA (5-methylami...		Lus10038747 [exp]	6.5	0.7932
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	9.3	0.7768
AT1G51310			transferases;tRNA (5-methylami...		Lus10039111 [exp]	11.6	0.7517
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	13.0	0.7752
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	16.9	0.7424
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	17.7	0.7661
					Lus10015768 [exp]	18.7	0.7519
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	20.6	0.7676
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	21.0	0.7681

Compare expression of checked genes

Lus10025895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.