Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07310 417 / 2e-145 Protein of unknown function (DUF760) (.1) AT5G48590 347 / 5e-118 Protein of unknown function (DUF760) (.1) AT1G48450 192 / 1e-56 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G17800 186 / 1e-54 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G32160 182 / 2e-53 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038208 [exp] 726 / 0 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 399 / 5e-138 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 393 / 1e-135 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 389 / 5e-134 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10035392 [exp] 203 / 3e-61 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 192 / 7e-57 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10030993 [exp] 190 / 4e-56 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10041984 [exp] 188 / 3e-55 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10000084 [exp] 162 / 2e-47 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247700 [exp] 477 / 2e-168 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1) Potri.003G097400 [exp] 201 / 3e-60 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 199 / 2e-59 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 185 / 2e-54 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10025896 pacid=23177468 polypeptide=Lus10025896 locus=Lus10025896.g ID=Lus10025896.BGIv1.0 annot-version=v1.0 ATGGAATCGGCCCTTTCCAATCACACCACCCTCTCCTTCTTCCTCTTTCTCTTCTCTTCGCTGACTACCCGTCTAACTGCTCATCGGAGTCTGAGCTTCC GGCTCGATTCAGCCAGGGGAGCAAGTTCATTCGTTCTTGATAGGCGCACTCCATCGCTTGTTGTGGCTCGAGCTGGTTCAAGCCAGTGTGAGCCTAGTAA CAGCAGCTATAGCGGGAGTTTGAACACGCCTCTGGAGCCTCGTTCTGCTGCTGGCAAGTTCCTGAGTGGCGTGTTTCAGAACCAGAGGTCCCTGTTTCAT ATCGCCGTAGCTGATGAACTGAAGGCTTTGGCCGATGAGAGGGATACTGCTGCTTCACGCCTGTTGAACAGCTCCGGCTCCGATGAAGCTGTGCTTCACA GGAGGATCGCTGAACTGAAAGAGCAACAGTGCCAAGTTGCAGTTGAAGATGTCATGTATATGTTGGTTCTGTATAGATTCTCAGAGATCAGGGTCCCTTT GGTTCCAAAGCTCTCTAAGTGCGTTTACAATGGAAGACTGGAGATATGGCCTGCTAAGGACTGGGAGCTAGAGTCTATCCATACCTGTGACGTTTTAGAG ATGATAAAGGAACATGTCTCTACTGTCATTGGCCTACGATCAGATTCTAGTGTCACTGATACTTGGGCGACGACAGAAATTCAGCAGGTACACCTTGGTC AGCTGTATGCTTCCTCCATCTTATATGGATACTTTCTGAAGTCTGCTTCAGTAAGGCATCAATTGGATCGATCTCTAGCTCTACCTCGACAGGATCTCCA TGTTGCTCAACGATCAAGCCTTCAGCATTCGACAGGATCTTCATATCGCTCAACTATCAAGCCTTCAGTATTTGGTGACAGGAAGAAGTTACAATCTTTG TCGTCCGCTCATGGATCATCTAAACAGGAGGCTGCTGGTCAAAGTTTGAGGTCTTACGTGATGGGATTCGATGCTGAGTCGTTACAGAGATGTGCGAGGA TGAAGTCCAAGGAGGCTTTGAATTTGATTGAGAAGCAGAGCTGTGCACTTTTCGGGGATGAGACGACAGGTGTGGTGGCCAGCAACGAGACTATTGTGAC GTCATTTGCTAGCCTGAGGAGATTGGTGTTGGAAGCAGCAGCTTTTGGTACTTTCCTGTGGGACACGGAAGAATATGTCAATTCTGTATATACGCTCAAG GAAAACAACTGA
AA sequence Show only first row Show all	>Lus10025896 pacid=23177468 polypeptide=Lus10025896 locus=Lus10025896.g ID=Lus10025896.BGIv1.0 annot-version=v1.0 MESALSNHTTLSFFLFLFSSLTTRLTAHRSLSFRLDSARGASSFVLDRRTPSLVVARAGSSQCEPSNSSYSGSLNTPLEPRSAAGKFLSGVFQNQRSLFH IAVADELKALADERDTAASRLLNSSGSDEAVLHRRIAELKEQQCQVAVEDVMYMLVLYRFSEIRVPLVPKLSKCVYNGRLEIWPAKDWELESIHTCDVLE MIKEHVSTVIGLRSDSSVTDTWATTEIQQVHLGQLYASSILYGYFLKSASVRHQLDRSLALPRQDLHVAQRSSLQHSTGSSYRSTIKPSVFGDRKKLQSL SSAHGSSKQEAAGQSLRSYVMGFDAESLQRCARMKSKEALNLIEKQSCALFGDETTGVVASNETIVTSFASLRRLVLEAAAFGTFLWDTEEYVNSVYTLK ENN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	0	1
					Lus10006006 [exp]	1.0	0.9678
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	2.8	0.9473
AT5G66930			unknown protein		Lus10019643 [exp]	2.8	0.9528
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	4.2	0.9500
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	5.7	0.9378
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	6.5	0.9427
					Lus10012525 [exp]	6.6	0.9146
AT2G24550			unknown protein		Lus10020142 [exp]	6.7	0.9393
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	7.1	0.9390
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	8.4	0.9432

Compare expression of checked genes

Lus10025896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.