Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038207 [exp] 279 / 3e-98 ND / Lus10003161 [exp] 196 / 3e-65 ND / Lus10002344 [exp] 147 / 8e-46 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247600 [exp] 145 / 2e-45 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025897 pacid=23177531 polypeptide=Lus10025897 locus=Lus10025897.g ID=Lus10025897.BGIv1.0 annot-version=v1.0 ATGATCGTGTTACTGGTGAGGCTAATCTTCTTGGCGATAAGCACCGCGTCCAACCTCATCTCCCGCCTAATCTTCAACACAACAGCTTACTTCCTAGTCC TGATCATCCAAGGACTCCGAGTCCCCGGCCAGGCGGTTCAGACCGGGCTGGAGCAAGTCGGGGAAGCTCTTAAATCCGTCATCGACTACATCTTCCAGCT CATCTTGGAAGCCGTGACTTCCGCTGTGTCAGCAGCATTAGAGGCCGTGTTCGAAGCGATTGTCGGGTCGTTCACCTCGACCGGGTCGGCTGTGGGAGGG CTGATTGAAAACACGAGGAATTCGATGGAAGGGTTGTTGAAGGACTTGCCGGAGCTTGGTCAGGAGCTGTCGGATTTGATCACCAAGATGCTGTCGGATG CCTTCGAGAATTATCTGGGGGCTCTTGGATATGTCGCCGAAAACGTCGTTGACAATTAA
AA sequence Show only first row Show all	>Lus10025897 pacid=23177531 polypeptide=Lus10025897 locus=Lus10025897.g ID=Lus10025897.BGIv1.0 annot-version=v1.0 MIVLLVRLIFLAISTASNLISRLIFNTTAYFLVLIIQGLRVPGQAVQTGLEQVGEALKSVIDYIFQLILEAVTSAVSAALEAVFEAIVGSFTSTGSAVGG LIENTRNSMEGLLKDLPELGQELSDLITKMLSDAFENYLGALGYVAENVVDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025897 [exp]	0	1
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	1.7	0.9394
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	2.8	0.9001
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	2.8	0.9350
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	4.9	0.9223
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	5.3	0.9013
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	5.5	0.9187
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	5.5	0.9249
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	5.7	0.8947
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	6.0	0.9001
AT1G54120			unknown protein		Lus10013152 [exp]	6.7	0.8835

Compare expression of checked genes

Lus10025897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.