Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 421 / 2e-148 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 134 / 6e-36 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 95 / 7e-22 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 79 / 2e-16 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT1G49670 72 / 1e-13 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G56460 55 / 3e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 52 / 2e-07 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT3G45770 48 / 5e-06 Polyketide synthase, enoylreductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038206 [exp] 630 / 0 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 487 / 4e-173 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 410 / 3e-143 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 407 / 7e-143 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 388 / 2e-135 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 385 / 3e-134 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 324 / 3e-112 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 139 / 7e-38 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 137 / 5e-37 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342900 [exp] 450 / 6e-160 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 449 / 2e-159 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 422 / 5e-149 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 422 / 7e-149 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 356 / 5e-124 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 132 / 3e-35 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 109 / 3e-27 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 100 / 6e-24 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G233800 [exp] 80 / 9e-17 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 79 / 2e-16 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10025898 pacid=23177653 polypeptide=Lus10025898 locus=Lus10025898.g ID=Lus10025898.BGIv1.0 annot-version=v1.0 ATGCCGGAGAAGCTAATGCGCGCCCTCCGTTACGATCGCTACGGCGGAGGAGCCTCTGCTTTGAAGCATGTTGAAATTGCAATGCCGGTGCCGAAGAAGG GCGAGGCTTTGGTGAAGGTGGAAGCCATCAGTCTGAATCCAGTCGACTGGAAAATGCAGAAAGGTGAGCTCAGGCCTATCCTCCCTTTCAGATTCCCCCA TATCCCAGGTACCGACATTTCAGGAGAGGTTGTTGAGATTGGACCAGGAGTCAAACAATTCATCCCTGGTGATGCAGTCGTCGGCATGGTCAACCATTTT ATGGGAGGAGGGCTAGCTGAGTACGCAATATTGAAGGAGTGGATATCCGTAAAAAGACCAGCACAAGTTTCAGCAGCAGAAGCTTCAGGATTACTCGTTG CTGGCCTGACAGCTCATCAAGCTCTCACCCAAGCAGCCGGAATCAAACTTGACGGAACTGGCGAGAGGAAGAACATCCTCATCACTGCAGGATCAGGAGG TGTGGGTCATTACGCCGTTCAGCTAGCAAAGCTCGGCAATGTCCATATAACCGCGACTTGTGGTGCCCGAAACATGGAACTCGTCAAGAGTTTAGGAGCC GACGACGTGATCGATTACAAGACTCCGTCCGGAGCATCTCTCCAGAACGGCCCATCATCTGCCAGAAAGTATGATGCAATCATCCATTGCGCGACCGGGG TTCCCTGGTCGACTTTCGAGCCTAATCTGACCGAAAAAGGGAAGGTTGTTGATATTACTCCTAGTACTGGTGCAATCCTGAATTCTGCTGTGAAGCTGCT TACTTGCTCGAAGAAGAAGCTGGTGCCACTGCTCTTGATCCCCAAAGCTCAGAACATTGAGTATCTACTCAATCTGGTGAAGGAAGGGAAGATGAAGACG GTGATCAACTCGAGTTATCCGTTGAGCAGAGCTGAAGATGCTTGGGCAGAGATTATGGATGGTCATGCTACAGGGAAGATTATAGTGGAACCCTTTGTGT AG
AA sequence Show only first row Show all	>Lus10025898 pacid=23177653 polypeptide=Lus10025898 locus=Lus10025898.g ID=Lus10025898.BGIv1.0 annot-version=v1.0 MPEKLMRALRYDRYGGGASALKHVEIAMPVPKKGEALVKVEAISLNPVDWKMQKGELRPILPFRFPHIPGTDISGEVVEIGPGVKQFIPGDAVVGMVNHF MGGGLAEYAILKEWISVKRPAQVSAAEASGLLVAGLTAHQALTQAAGIKLDGTGERKNILITAGSGGVGHYAVQLAKLGNVHITATCGARNMELVKSLGA DDVIDYKTPSGASLQNGPSSARKYDAIIHCATGVPWSTFEPNLTEKGKVVDITPSTGAILNSAVKLLTCSKKKLVPLLLIPKAQNIEYLLNLVKEGKMKT VINSSYPLSRAEDAWAEIMDGHATGKIIVEPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	0	1
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	1.7	0.9861
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	2.0	0.9810
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	3.5	0.9749
AT1G58070			unknown protein		Lus10015482 [exp]	5.7	0.9751
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	7.5	0.9637
					Lus10004651 [exp]	7.7	0.9701
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10035373 [exp]	10.1	0.9371
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	10.6	0.9569
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	11.2	0.9714
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	11.8	0.9699

Compare expression of checked genes

Lus10025898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.