Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 421 / 1e-148 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 96 / 3e-22 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 78 / 4e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 64 / 4e-11 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT4G21580 59 / 2e-09 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G56460 54 / 5e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G65560 44 / 8e-05 Zinc-binding dehydrogenase family protein (.1) AT5G61510 42 / 0.0006 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038205 [exp] 592 / 0 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 516 / 0 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 513 / 0 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 381 / 1e-132 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 375 / 2e-130 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 369 / 1e-126 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 238 / 2e-78 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 104 / 4e-25 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 101 / 5e-24 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342800 [exp] 443 / 3e-157 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 439 / 1e-155 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 431 / 1e-152 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 426 / 2e-150 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 349 / 3e-121 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 96 / 6e-22 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 84 / 4e-18 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 77 / 2e-15 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 67 / 2e-12 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.019G065700 [exp] 63 / 7e-11 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10025899 pacid=23177540 polypeptide=Lus10025899 locus=Lus10025899.g ID=Lus10025899.BGIv1.0 annot-version=v1.0 ATGTCATCAGATGCAGAAAAGAAGCTTATGCACGTCCTTCAGTACGCTAGCTGCGGCGGTGGAGCTGCTGCTTTGAAGCATGCTGAAGTTCCGATCCCTA CTCCGGCGAAGGATGAGGTGTTGGTTAAGTTGGAAGCAGTTTCTGTCAATCCAATCAACTGGAAAGTTCAGAGTGGCATGATGCGCCCCTTCTTGCCCCG CAAATTCCCTCGCATACCCTGTGCTGATGTAGCTGGTGAGGTGGTGGAGGTTGGTTCAGCAGTAGAGAAGTTCAAAGCTGGTGACAAAGTTGTAGCGTAT CTTGGTCTATCTGTTGAGGGTGGAATGGCCGAGTATGCGACTGCCAAGGAAAGCTCAACAGTTGCCAGGCCCGCTGAAGTTTCAGCAGCCGAGGGGGCAT CTTTGCCCGTTGCTGGTGTGACGGCTTACCAGGCCCTCACAAAGGTTGCCGGACTTAACCTGGATGGATCCGGTGACCAGAAAAACATTCTTGTAACTGC AGCTTCTGGTGGTGTGGGTCAGTATGCAGTTCAAATGGCAAAGCTAGGGAACGCACATGTGACGGCCACATGTGGGGCGAGGAACATTGAACTTGTGAAG AGCTTAGGCGCTGATGAGGTTCTTGATTACAAAACACCAGAGGGAGCAGCTCTCACGAGCCCTTCTGGCAAGAAGTATGATGCTGTGGTTCACTGCACTA CTGGTGTTTCGTGGTCGACATTTGAGCCGAACTTGAGCGAAAGTGGCAAGGTTATAGATCTCACACCTGCACCATCTGCCTTCCTGACGTTTGTCCTGAA GAAGCTGACCTTCTCCAAGAAGCAGCTGGTGCCACTTTTTGGTGATATTAAGAGTGATGACTTGGAGTATCTTGTTAAGCTGGTGAAGGAAAAGAAGCTC AAGACGGTAATAGACTCTACGTATGCACTGGCCAAGGCTGAAGATGCTTGGGCTAAGAGCATTGAAGGGCATGCCACTGGTAAGATCATTGTGGAGCCTT AG
AA sequence Show only first row Show all	>Lus10025899 pacid=23177540 polypeptide=Lus10025899 locus=Lus10025899.g ID=Lus10025899.BGIv1.0 annot-version=v1.0 MSSDAEKKLMHVLQYASCGGGAAALKHAEVPIPTPAKDEVLVKLEAVSVNPINWKVQSGMMRPFLPRKFPRIPCADVAGEVVEVGSAVEKFKAGDKVVAY LGLSVEGGMAEYATAKESSTVARPAEVSAAEGASLPVAGVTAYQALTKVAGLNLDGSGDQKNILVTAASGGVGQYAVQMAKLGNAHVTATCGARNIELVK SLGADEVLDYKTPEGAALTSPSGKKYDAVVHCTTGVSWSTFEPNLSESGKVIDLTPAPSAFLTFVLKKLTFSKKQLVPLFGDIKSDDLEYLVKLVKEKKL KTVIDSTYALAKAEDAWAKSIEGHATGKIIVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025899 [exp]	0	1
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	2.4	0.9170
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	6.5	0.8950
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	11.7	0.9213
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	18.6	0.9103
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	20.9	0.9040
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	22.6	0.9048
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	23.5	0.9035
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	27.1	0.9039
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	27.1	0.9076
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	30.3	0.8963

Compare expression of checked genes

Lus10025899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.