Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13030 277 / 3e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038204 [exp] 295 / 1e-95 AT4G13030 133 / 1e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247400 [exp] 404 / 5e-133 AT4G13030 292 / 8e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G199700 [exp] 119 / 6e-29 AT4G13030 125 / 9e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G124300 [exp] 118 / 2e-28 AT4G13030 112 / 4e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025900 pacid=23177559 polypeptide=Lus10025900 locus=Lus10025900.g ID=Lus10025900.BGIv1.0 annot-version=v1.0 ATGGGCGGCGATACGTTAACAACCCCTTTTGTTGCCACTCCTTCTGCAGAAGAATCTTCCATCGACCACGATTTCTCCGGGTCGCTGTCGCCGGGCTTCT CCTTTCATCCCAGAGATTTGGATGCTAAGGAGGTGGAAGGAGCCGATGATGAAGAGGATCATTCAGTCTCTCAAGAAGAACTAGATGGAGTGATTGAGAG GATTTCTGGTATTCGCCTGGAAGTCGAATCCAAGAAAATGAATAAACGCAGGGCTTACGCTGAAATATTGGCAAGTTATGATCAATTGAATGTGAGAAGT GAGGCCCTTGAAGATGCCAAGATCAAAATTTTGAGTTACACTCCTGGAAAATGGATTGAGAATGGCAGAGCAAGGAAATATTGCACCAATTATGTTCCCG AGACTACAACATTGTTACTTGTTGGTCCAAAAGGATCTGGAAAAAGCAGTCTAATCAATCGGATTTCAAAGGTGTTTGAGAAGGATAAGTTCGCGTCTGA AAGAGCGCAAGTATCGTGTAATTCTTCTGTTGCTGATGGGACCTACTTCCTTCAGGAGTATATGATCCCTAGAAATTCGAGTTCATTCTGCGTTTATGAT ACCCGTGGCTTGTCTGATGATTCATCAGATAACATTGAGATGCTCAAGCATTGGATGACTAAAGGTGTTCAGAACGGGGAACTGATAGTCAGGCCATCTG ACAGTCCAAGTTTGAAGGCAAGAATGGAGAGCAAAGTCCACGGGAATGTTTGCTGGTCCAAAGAAAGAAGCATGGTTAACTTTGTAATATATGTCATTAA CGGCCTTGAACTTTTGGAAGCCATGGAAAGCAATTCCGAGGAAGGCAGAATATACACTCAAATGATTGTTACAACATTCAACACTCCGTATTTGTCATTT AAAGATGATAAACCAGTGGTTGCTGTAACACATGGTGATCTGATTTCACTTGCTGACCGGGCCCGTATTCGTGTTTATTTAGGAGACCTTTTGGGTATTC CAGCTGCAAAACAGATTTATGACATTCCAGAAAAGTGTGATCCAGCAACTGAGTTTGCAATTGCAAACATGCTGGTCTATGCACTAGAGCATGCTGAAAA GCACATGCCTCCTCGCGGTCACAGGCACTCGCCTTTCAGACAGATTCATGTTCCAGCTCTTCTAAAATACTTTTGTCTGGCTTTACTCGTTGGGATTCCT CTGTTCTCGTTCTGCATGCAACACGCTCGTTGGGAGCCGGAGAATTTTTCAACCATGCACTGTTCTGATTCAGTTCATGCTGTTTCATGTAACTATACAT CCGGTCACAAAGCATTTGAAGATCCATCCAGTCGCAAAGCAGTTGAAGATCCATCTTGTTGCAAGCCATGTGCAGATCCATCAAGTCGCAGATCATCTGA AGATCCATCCAGTCGCAGACCATCTGAAGATACATTCTGTTCAAAAGCGTATGAAGATACCAATTCGGAAGCCTGCAAAGATGCATTTCTTCACCAAGCA TCTGAACATTCTTACAATGGCAAAGAATCTGAAGATTCCTCAAGCAGCAAAGCATCTGAAGGTTCGTCAAGTCACAAAGCATATGAAGATTTGTCAAGCC GCAAAGCATCTGAAAATTCGTCAAGCCGCAAAGCATCTAGAATTTCTAACAATGGCAAAGCATCTAGAATTTCTAACAATGGCAAAGCATCTGAAGATTC GTCAAGTTGCAAAGCATCTGAAGATTCGTCAAGTCGCAAAACATCAGGAATTTCCAACAGTGGTGAAGAATCTGAAGATTCGTCAAGCCGCAAAGCATAT GAAGATTCATCAGGTCGTGAAGCATCTGAAGATTCGTCAAGTCGTGAAGCATCTAGACTTTCATCAGATGGCAAACTAGATTGGCCTTCCGAAGAAGTGC ACCACCACCATCACCGCTGTCCAATCATATGCCCACAGCACGGCCGCCACAACCACCACTACCACCACCACTGTCAGCACCGCAGTATTACGACGGTGAC TGCTTTTCCGCCGTCGGTGTTAAACCCTGTCGGTGCAGGGGAAGCCACTGCTTCAGACGCAACAAACGCCTCAAGCAGTTTTCACAGGGACGAGGCGGAG GTGGGCGAGATATTAGGAGCGGATGTTGAAGTCAACGATGATGATGATGATCCGGTTTTCGTATAG
AA sequence Show only first row Show all	>Lus10025900 pacid=23177559 polypeptide=Lus10025900 locus=Lus10025900.g ID=Lus10025900.BGIv1.0 annot-version=v1.0 MGGDTLTTPFVATPSAEESSIDHDFSGSLSPGFSFHPRDLDAKEVEGADDEEDHSVSQEELDGVIERISGIRLEVESKKMNKRRAYAEILASYDQLNVRS EALEDAKIKILSYTPGKWIENGRARKYCTNYVPETTTLLLVGPKGSGKSSLINRISKVFEKDKFASERAQVSCNSSVADGTYFLQEYMIPRNSSSFCVYD TRGLSDDSSDNIEMLKHWMTKGVQNGELIVRPSDSPSLKARMESKVHGNVCWSKERSMVNFVIYVINGLELLEAMESNSEEGRIYTQMIVTTFNTPYLSF KDDKPVVAVTHGDLISLADRARIRVYLGDLLGIPAAKQIYDIPEKCDPATEFAIANMLVYALEHAEKHMPPRGHRHSPFRQIHVPALLKYFCLALLVGIP LFSFCMQHARWEPENFSTMHCSDSVHAVSCNYTSGHKAFEDPSSRKAVEDPSCCKPCADPSSRRSSEDPSSRRPSEDTFCSKAYEDTNSEACKDAFLHQA SEHSYNGKESEDSSSSKASEGSSSHKAYEDLSSRKASENSSSRKASRISNNGKASRISNNGKASEDSSSCKASEDSSSRKTSGISNSGEESEDSSSRKAY EDSSGREASEDSSSREASRLSSDGKLDWPSEEVHHHHHRCPIICPQHGRHNHHYHHHCQHRSITTVTAFPPSVLNPVGAGEATASDATNASSSFHRDEAE VGEILGADVEVNDDDDDPVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	3.9	0.8607
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	8.8	0.8009
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	25.8	0.8030
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	30.4	0.8458
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	39.4	0.7808
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029469 [exp]	40.7	0.8101
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	41.7	0.8173
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	44.2	0.7874
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	45.2	0.8076
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	46.3	0.7797

Compare expression of checked genes

Lus10025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.