Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 410 / 6e-138 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 406 / 1e-136 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 385 / 1e-128 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 360 / 7e-119 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 323 / 2e-104 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 320 / 1e-103 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 310 / 1e-99 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37370 307 / 2e-98 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 295 / 7e-94 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT2G23190 292 / 3e-92 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025904 [exp] 620 / 0 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 590 / 0 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038178 [exp] 578 / 0 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 489 / 4e-169 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 488 / 1e-168 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 459 / 2e-157 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 429 / 2e-145 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 424 / 4e-143 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 416 / 1e-140 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 564 / 0 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 444 / 2e-151 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 427 / 1e-144 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 424 / 5e-144 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 418 / 2e-141 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.013G125300 [exp] 407 / 5e-137 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037800 [exp] 404 / 1e-135 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 402 / 4e-135 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 396 / 1e-132 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 394 / 2e-132 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025901 pacid=23177583 polypeptide=Lus10025901 locus=Lus10025901.g ID=Lus10025901.BGIv1.0 annot-version=v1.0 ATGGAGCTCTACATCTCCACATGCATCCTCATCATATCACTTCTCCTCTTTTACAAGCTATTCACTAACAAAACCACACAAAAGCCCTTCAATCCAATAC CTGAACCCTCAGGTTGCCTCCCATTCATTGGCCACCTCCACCAATTTCTCCTCGCCCGCAAGACGCTAGCAAGAACCTTCGCCGACTTGGCGGACAGGCA TGGCCCGATCTTCGCGGTAAGGTTGGGGGTCCACCGTGTCGTCGTGGTAAGCGATTCCAAAACCATTCAGGAATGTTTCACCACTCGAGACAGGGATCTG GCTTCTCGACCCAGATCGAGCCAGGCAGAGCACCTGACTTACAACTATGCCGGGTTCGCTGCAGCGCCCTACGGCTCTTACTGGCGTGACGTTCGGAAGC TGGCTGTCACTCAGCTGCTGTCCACCCACCGGCTTAAATCCCTGCGCCATGTTTATGTGTCGGATATTGGGATGTTGATGACGGAATTGTATCAACTCTG CATACGTGGTGGTGGTGATGGGAGTGGAAGCAAGGGAGGTGGTCCGGTTGTTGTGATCAGCGACTTGTTTCAGCAGTTGACATCCAACACTATAACTAAT TTGATCGCAGGGAAGAGATATTTCAGTTACAGGGCCGAGGATGGGGAAGAAGGAGAGCGGATAGGCGAGCAGATAAAGGAGTTCATGCGTCTCTGCGGTG AATTTGTACCGGGGGATATGATTCCGTCTTTGGGATGGTTGAATTGGCTGCCTGGACCTGTTCAATCGATGAAACGCATTGCTGGGAAACTGGATGAGGT GATGCAGAGCTGGATTGAAGAGCACAAGCTCAAAAGGACCAATATTGAAAAGGGACTCTTCAAAGGTGAAGAACAGAGTGACTTCATGGATGTTATGCTG TCCGAAATCGACCCGGATTTCTGTGATGAGTATTCCCCTGAAACAGTCATCAAGGCTACCGCAATGACTCTGATCCTGGCCGGTGCTGAGACGACATTCG TGACAATGACGTGGATGCTTTCTAATCTGCTGAACAACAGAGGTTCAATGGAGCTGGCACAACAAGAGCTAGACACCAAGGTCGGAAGAACTCGTACCGT AGAGCCCTCCGACATAGAAAATCTAGTCTACATCCAAGCCATCGTCAAAGAAACCCTCCGCCTCTACCCTGCTGCGCCAGTGGGTGTCCCCCATGAAGCG ATCGAGGAATGTACCATCAACGGTTACAAAATACCTAAGAATACACGCATCTTTACGAACCTGTGGAAGTTGCACAGGGATCCTAATGTGTGGTCGGATC CCGAGGAGTTCAAACCAGAGAGGTTCCTAGAGGAGAAGACGAATAATTCCGTAATAGAGGGTTTGTCGAATAATGTTAACTACTCGTCCGCATCGGGGCA GAACCATTTCGAGTACATCCCGTTCGGGTCGGGGAGAAGGTCGTGTCCGGGGATGGGATTTGCGTTGCAGGTTATGAATTTGACGCTAGCGAGGTTGCTG CAGAGTTTTAGCCTTACGACACCGGGGGATGATGATGCTGTGGATATGGGTGAAGGAATGGGATTGACTTTGCCTAAAGCGACTCCATTGGAGGTTCGGA TTGTTCCTCGCCTACTTCCTCCACTCTATGAATGA
AA sequence Show only first row Show all	>Lus10025901 pacid=23177583 polypeptide=Lus10025901 locus=Lus10025901.g ID=Lus10025901.BGIv1.0 annot-version=v1.0 MELYISTCILIISLLLFYKLFTNKTTQKPFNPIPEPSGCLPFIGHLHQFLLARKTLARTFADLADRHGPIFAVRLGVHRVVVVSDSKTIQECFTTRDRDL ASRPRSSQAEHLTYNYAGFAAAPYGSYWRDVRKLAVTQLLSTHRLKSLRHVYVSDIGMLMTELYQLCIRGGGDGSGSKGGGPVVVISDLFQQLTSNTITN LIAGKRYFSYRAEDGEEGERIGEQIKEFMRLCGEFVPGDMIPSLGWLNWLPGPVQSMKRIAGKLDEVMQSWIEEHKLKRTNIEKGLFKGEEQSDFMDVML SEIDPDFCDEYSPETVIKATAMTLILAGAETTFVTMTWMLSNLLNNRGSMELAQQELDTKVGRTRTVEPSDIENLVYIQAIVKETLRLYPAAPVGVPHEA IEECTINGYKIPKNTRIFTNLWKLHRDPNVWSDPEEFKPERFLEEKTNNSVIEGLSNNVNYSSASGQNHFEYIPFGSGRRSCPGMGFALQVMNLTLARLL QSFSLTTPGDDDAVDMGEGMGLTLPKATPLEVRIVPRLLPPLYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025901 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	4.4	0.9898
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	7.7	0.9876
AT1G35210			unknown protein		Lus10010343 [exp]	8.5	0.9874
AT4G37290			unknown protein		Lus10010255 [exp]	10.6	0.9874
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009679 [exp]	12.0	0.9543
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	13.0	0.9853
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	14.0	0.9859
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	15.5	0.9852
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	15.7	0.9841
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	16.0	0.9825

Compare expression of checked genes

Lus10025901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.