Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 427 / 3e-145 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 427 / 4e-145 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 404 / 5e-136 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 371 / 1e-123 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 337 / 5e-110 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 303 / 4e-97 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37340 303 / 5e-97 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT5G07990 303 / 7e-97 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37330 301 / 1e-96 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37310 300 / 6e-96 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038200 [exp] 1010 / 0 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 569 / 0 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 525 / 0 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 523 / 0 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 520 / 0 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 498 / 1e-172 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 484 / 6e-167 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 474 / 2e-163 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038178 [exp] 466 / 5e-160 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 585 / 0 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 474 / 2e-163 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 467 / 1e-160 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 464 / 6e-160 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.004G106600 [exp] 452 / 3e-155 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.009G108600 [exp] 451 / 7e-155 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 416 / 4e-141 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 409 / 5e-138 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 407 / 3e-137 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 405 / 1e-136 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025902 pacid=23177476 polypeptide=Lus10025902 locus=Lus10025902.g ID=Lus10025902.BGIv1.0 annot-version=v1.0 ATGGATCTAATTTCCCACCTCCCGGAAATCCTGGTGGCTGGAGCCGTCGCCGTATTCATCCACCTATGGCGGCTAGGACGAACCAAAGATACCACCAACC TCATTAATCCTCCGGTGCCCCAAATCCCAGGCTCACTCCCCTTAATCGGCCACCTCCACCTCCTCGGCGGCAACCAGACCCTCTCCCGCAAACTCGCCGC CTTCTCCGAAAAGTACGGCGCCGTTTTCACCATCCGCCTCGGAGCCAATGACGCCGTAGTGGTCAGCGACTACGAAGGCATGAAAGAGTGCTTCACCACC AACGACCGGATCCTCTCCTTCCGGCCCGACTCCAGCCAGGCCAAGATCCTCGGCTACAACTACGCTGCCTTCGGATTCGCCTCCTACGGAAACTACTGGC GCGACATCAAGAAGCTGCTCATGAACCAGCTCCTCTCCGTCCAGCGTATCAAAGCCCTCCGTAACGTCCAGATCTCCGAGGTCGAATCGCTCATGAAAAG CCTCTACCAAAGCAGCAAGCTCGGGAGGCCGATTAACATGAGCTCTTCTCTCCAGCACTACGTCCTTAACATCATTACTCGGATGGTAGCTGGAAAGAAG TACTTCAATGACAAGAACGAGGAGGATGTTTCCGGGGGTAGGCCGATCGGTCAGGTTATGAAGGAGTTCATGCTTGTCACCGGCACCCTTGTTCCTTCCG ATTTGATTCCGGTTCTTGGTTGGTTCGGTTTTAAAGGAGTTGTAAATGCGATGAAGCGCGTTTCGAAGGAGCTCGACGTGATCATGGAGAGTTGGATCGA CGACCACAAGAAGAAAGAAATCGCTACAGGTGGCAAAATCAGCTCCGATTCGGATTTGATTGATGTTATGCTCCACGAAATTAAAGATGATGTCGCTTAT GGCCACAAACGCGAGACCATTGTTAAGGCCACAGCCATGTCTTTGATAGTGGCAGGTTCTGATACGACGTCGATTACGCTGTCGTGGATCCTGTCCAACT TAGTGAACCACAAGAGGGTACTTAAGTTGGCGCAAGAAGAAATCGACGAGAAGGTAGGAAGAGATCGATGGGTGGACGATTCGGACATCGAGAACTTGGC ATACTTGGGAGCGGTGATCAAGGAGACATTGAGGATGTACCCTCCCGGTCCACTTTCAGTGCCACGAGAAGCATCAGAGGACATCACGATCAAAGGGTAC CACGTTCCGAAAGGAACTAGATTCTTCGCGAATTTCTGGAAGCTGCACAGGGACCCCAAAGTGTGGTCTGACCCGGATGAGTACAAGCCGGAGAGGTTCC TGACCGACAACGCGAATTTGGAGATATTTGGACAGCAGTTCGAATACCTCCCGTTCGGGTCTGGCAGGAGAGGATGCCCCGGGATCAATTTCGGGATGCA GGTGACGAAACTGACGTTGGCGAGGCTGCTGCAAGGGTTCGATTGGGGTACGGAAGGGGACAAGCCGGTGGACATGACGGAAGGGATGGGAATCGCGCTT CCAAAGGCTAACCCGCTGGAGGTTGTGCTCACCCCACGCCTTGCTCCTCAGCTTTACTAA
AA sequence Show only first row Show all	>Lus10025902 pacid=23177476 polypeptide=Lus10025902 locus=Lus10025902.g ID=Lus10025902.BGIv1.0 annot-version=v1.0 MDLISHLPEILVAGAVAVFIHLWRLGRTKDTTNLINPPVPQIPGSLPLIGHLHLLGGNQTLSRKLAAFSEKYGAVFTIRLGANDAVVVSDYEGMKECFTT NDRILSFRPDSSQAKILGYNYAAFGFASYGNYWRDIKKLLMNQLLSVQRIKALRNVQISEVESLMKSLYQSSKLGRPINMSSSLQHYVLNIITRMVAGKK YFNDKNEEDVSGGRPIGQVMKEFMLVTGTLVPSDLIPVLGWFGFKGVVNAMKRVSKELDVIMESWIDDHKKKEIATGGKISSDSDLIDVMLHEIKDDVAY GHKRETIVKATAMSLIVAGSDTTSITLSWILSNLVNHKRVLKLAQEEIDEKVGRDRWVDDSDIENLAYLGAVIKETLRMYPPGPLSVPREASEDITIKGY HVPKGTRFFANFWKLHRDPKVWSDPDEYKPERFLTDNANLEIFGQQFEYLPFGSGRRGCPGINFGMQVTKLTLARLLQGFDWGTEGDKPVDMTEGMGIAL PKANPLEVVLTPRLAPQLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	1.7	0.9963
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	2.0	0.9963
					Lus10005629 [exp]	2.0	0.9957
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	2.4	0.9959
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	2.4	0.9952
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	3.9	0.9955
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	4.6	0.9942
					Lus10014508 [exp]	6.9	0.9934
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	7.4	0.9921
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	8.5	0.9903

Compare expression of checked genes

Lus10025902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.