Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60500 466 / 1e-157 DRP4C Dynamin related protein 4C (.1) AT1G60530 173 / 1e-49 DRP4A Dynamin related protein 4A (.1) AT1G14830 67 / 1e-11 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 64 / 1e-10 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G14120 63 / 3e-10 DRP3B dynamin related protein (.1.2.3) AT4G33650 62 / 6e-10 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G44590 61 / 2e-09 ADL1D DYNAMIN-like 1D (.1.2.3) AT5G42080 60 / 2e-09 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 58 / 1e-08 ADL1B DYNAMIN-like 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024334 [exp] 730 / 0 AT1G60500 771 / 0.0 Dynamin related protein 4C (.1) Lus10019170 [exp] 68 / 9e-12 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 68 / 1e-11 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10012076 [exp] 66 / 9e-11 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 66 / 9e-11 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10040117 [exp] 65 / 9e-11 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10019506 [exp] 64 / 2e-10 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10014041 [exp] 64 / 2e-10 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 64 / 3e-10 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024200 [exp] 546 / 0 AT1G60500 830 / 0.0 Dynamin related protein 4C (.1) Potri.003G024600 [exp] 540 / 0 AT1G60500 835 / 0.0 Dynamin related protein 4C (.1) Potri.003G024900 [exp] 537 / 0 AT1G60500 827 / 0.0 Dynamin related protein 4C (.1) Potri.013G124600 [exp] 522 / 2e-179 AT1G60500 775 / 0.0 Dynamin related protein 4C (.1) Potri.013G119900 [exp] 519 / 2e-178 AT1G60500 751 / 0.0 Dynamin related protein 4C (.1) Potri.013G120000 [exp] 514 / 3e-176 AT1G60500 748 / 0.0 Dynamin related protein 4C (.1) Potri.001G095900 [exp] 508 / 9e-174 AT1G60500 798 / 0.0 Dynamin related protein 4C (.1) Potri.003G024800 [exp] 327 / 2e-106 AT1G60500 607 / 0.0 Dynamin related protein 4C (.1) Potri.010G105900 [exp] 72 / 4e-13 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G135100 [exp] 66 / 4e-11 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10025903 pacid=23177574 polypeptide=Lus10025903 locus=Lus10025903.g ID=Lus10025903.BGIv1.0 annot-version=v1.0 ATGCGCCTCCACCACCATTCCCATCCAACTCCGGAGCTCTCTCTCCAATATTCCTCAAATGGGTCCACCAAAACAGTATCTACAGACGAAACCCATGTCG CCGTTTCCATCAAAACCGCCACTGAAGAGATAGCCGGAGCTGGTAAGGGGATATCAAACAATCCGTTGACTTTAATACTCAGGAAAAATGGAGTCCCTGA TCTTACGATGGTGGATCTCCCTGGTATCACTAGAGTCCCCGTCCATGGACAACCTGAGGATATCTATGAGCAGGTCACCCAGACTATAATGGAGTATATC ATACCGGATGAAAGCATTAAATTGAATGTACTGTCGGCGACCGTTGATTTCTCGACCTGCGAGTCGATCAGGATGTGCAGAAGGTTGACAAAACAGGGGA TAGGACTCTGGCTGTTGTTACCAAGGTGGATAAATCTCCTGAAGGACTGTTGGAGAAGGTCATGGCTGATGACGTCGGGATTGGACTCGGCTATGTTTGC GTTAGGAATCGGATTGGTCATGAAACCTATGCGGATGCCAGACATGAAGAGGCAATGCTGTTCAATTCTCATCCTCTCTTGTCCAAGATCGACAAGTCTA TCGTTGTTTTGGCCCAGAAACTTGTGCTTCCCTGAAATCGTGAAGAAGATCAATGACAAGCTAGGAACAAACATGCAGGAACTAAACAAAATGCCCAAGT CAGTAAGTTCGGAAAGCGGCGTCGTGACTACTTTCATGGCGATACTGGCGTCTTCCAAGGAATCTCTCAGTAGGATTATTGTAAGAGGAGAATTCAGTGA GTATCCGGATGAGTTGCAGATGCATTGTACTGCCAGGCTTGCTGAAATGCTGGATAGGTTCGCTTCAGAATTGAGTTCTGCCCCTGAAAGCGACCAGGTA TTGAATTTTCTGGAGGATGTGGTACAGATTCTGGAGGAAGCGAAAGGGATATGGCTTCCAAATTACATGTCTTCAGGTGCTTTCATGTCCCTTCTCCAGA AGAAAATCCAAGGGATATCTTGGATTCCTCTTGATTTTGTGGATACAGTGTGGAACTATATAGAGGGGGTTGTATCATCTGTTGTGATGAAGCGATGTGA AAGCTATCACCGTTTGCAGCTTTACGCAAGGAGAACATGTCACAACCTTTACTTGAAAATGCGAGAGCGGTCTGTTGATTGGGTAAACGAGATACTGGAG ATGGAGAAATCAACTGATTACACATGTAACCCGGAGTACCTGACCCAGTGGAACAAACTCTTGGGTACCAGGCCTGATTTCCTTACATGTGTGGAAAGCC AAAAATCTGAAATAACAATTTCAGACTTTGGGTCTGTTACAGTTGGAGATGCTGTGAAGAATAGCCTTGTCCTGCTCCAAGCTTTTGACCTGAGGATGAG AGTTGTTACTTATTGGAAGATAGTCCAAAGAAGGCTGGTGGATTCCATGGCTCTTCATATTCAGCTGAGCATGAGGAACTTGGTTAACAGTGAGGTCGAC AAGGAGTTGGTGAATGGACTGTTGATGGGTAGTAGTAGCCATGTAGGAGTTGGCGCAATTGAAAGGGTTCTTGAGGAATCTCCTACTTTGGCAGCAAAGA GGGAGAAGCTCAATGGGAGCATCCAGCTACTGATGGAGTCGAAGGAGGTTGTCGCCACAATCATGGACAGGATTTCTAGTGTTTCTAGCTGA
AA sequence Show only first row Show all	>Lus10025903 pacid=23177574 polypeptide=Lus10025903 locus=Lus10025903.g ID=Lus10025903.BGIv1.0 annot-version=v1.0 MRLHHHSHPTPELSLQYSSNGSTKTVSTDETHVAVSIKTATEEIAGAGKGISNNPLTLILRKNGVPDLTMVDLPGITRVPVHGQPEDIYEQVTQTIMEYI IPDESIKLNVLSATVDFSTCESIRMCRRLTKQGIGLWLLLPRWINLLKDCWRRSWLMTSGLDSAMFALGIGLVMKPMRMPDMKRQCCSILILSCPRSTSL SLFWPRNLCFPEIVKKINDKLGTNMQELNKMPKSVSSESGVVTTFMAILASSKESLSRIIVRGEFSEYPDELQMHCTARLAEMLDRFASELSSAPESDQV LNFLEDVVQILEEAKGIWLPNYMSSGAFMSLLQKKIQGISWIPLDFVDTVWNYIEGVVSSVVMKRCESYHRLQLYARRTCHNLYLKMRERSVDWVNEILE MEKSTDYTCNPEYLTQWNKLLGTRPDFLTCVESQKSEITISDFGSVTVGDAVKNSLVLLQAFDLRMRVVTYWKIVQRRLVDSMALHIQLSMRNLVNSEVD KELVNGLLMGSSSHVGVGAIERVLEESPTLAAKREKLNGSIQLLMESKEVVATIMDRISSVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	0	1
					Lus10041745 [exp]	1.4	0.9684
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	1.4	0.9779
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	2.4	0.9639
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	2.6	0.9571
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	3.2	0.9485
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	3.2	0.9595
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	4.0	0.9635
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	4.1	0.9299
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	6.0	0.9444
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	7.4	0.9454

Compare expression of checked genes

Lus10025903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.