Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 397 / 7e-133 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 389 / 1e-129 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 385 / 2e-128 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 352 / 2e-115 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT4G37310 305 / 3e-97 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT2G25160 303 / 2e-96 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 293 / 1e-92 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G07990 291 / 6e-92 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 287 / 1e-90 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 287 / 2e-90 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025923 [exp] 656 / 0 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038178 [exp] 630 / 0 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 625 / 0 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 500 / 3e-173 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 498 / 1e-172 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 447 / 4e-152 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 410 / 5e-138 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 404 / 2e-135 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 405 / 3e-135 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 551 / 0 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 441 / 8e-150 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 436 / 8e-148 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 422 / 3e-143 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 418 / 3e-141 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.013G125300 [exp] 417 / 6e-141 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037800 [exp] 398 / 4e-133 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 397 / 6e-133 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 392 / 2e-131 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 393 / 3e-131 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025904 pacid=23177658 polypeptide=Lus10025904 locus=Lus10025904.g ID=Lus10025904.BGIv1.0 annot-version=v1.0 ATGGAACTCATCGCCGCCACCAATAATCATATCCTCCTAGCAATCTCTGGACTACTAATCACAATATTTCTTTTCTACAATCTCCGCCGCCAACGTTCCA CCACCAGTCATCCACCTCTGCCGCCGGAGCCATCAGGCGGCCTCCCAATTCTAGGCCATCTCCTTCAATTCATTTCTTCAAAGAAACCTCTCGCCCTAAC CCTCTCCGACATGGCCGACCGCCACGGTCCGATCTTCACCATCCGTCTTGGTGTCCACCTAGCGGTGGTGGCCAACGATCCCAAAACGGTCCAAGAATGC TTCACAACCCACGACAGGGTTTTAGCTTCTCGCCCTAAGTCAAGCCCCGCGCAGTACTTGAACTACAACTACGCCGGGTTCGGGTCAACGCCTTACGGAT CATACTGGCGCGACATCCGGAAGCTCGCCGTCACTCAGCTGCTATCCGGCCAGCGCCTCAAGTCCCTCCGGCACGTCCAGGTATCGGAGATTAATATGTT CGTGAAAGGGTTGCATGACACCAGTAATAGTACTGTTGTGGTGGTGATTAGCGAAATGTTTGAGCAGCTGGGTGCTAACATGATTACAAGGTTGATTGCT GGGAAGAGATATTTCAGTTACAGAGATGGTGGTAACAAGGGGGAGGAGGCAGGGGATAAGATTGGGGAGCTGATGAAGTCGTTCATGCGTCTTTGCGGGG AACTAGTGCCGTCGGATTTGTTGCCGGGTATTGGGTGGATGAATTGGTTTTGTGGGCCTGTGAAATCGATGAAGAGGATCGGTATGGAATTGGATGAGGT TATGCAGAGCTGGATTGATGAACATAAGCTGAAGAAGCAGAGTAGTGATGACGAGGGAGGGCAGAGTACTGACTTCATAGATGTGATGTTGTCACAGATT AAGGACGATTTTGCTGATCAATACTCCCCAGATATTATTATCAAGGCCACCGCACTTGAAGGAAATCTCCCAACTTCAAAATTGGAAATGTTCGACCATC CCAGTTACGTCATTGTTCATATAGACATTAGACAGACGCTGATCCTGGCAGGAGCGGACACAACATCAATTACCATGACATGGATACTCTGCAACTTGCT AAACAACAACCATGCAATGGAGGCTGTTCAGCAAGAGCTAGACACCAAAGTCGGCAGAACTCGAGCTGTCGAGTATTCGGACATCGACAACCTCGTCTAC CTCCAAGCCGTCGTGAAAGAAACCCTCCGCCTTTACCCTCCTGCCCCGATGGCAGTCCCGCACCAAGCGATGGAGGATTGCACAATCCAAGGCTACCACG TGCCCAAGGGTACACAAGTGTTTCCAAACTTATGGAAGATCCATCGAGACCCGAACTCGTGGGTGGATCCTGATAAGTTCAGACCGGAGAGGTTCCTTGA TGATGATAGCAATAACAGTGGTTCCATTGATTTGTCTGGCAAGAATTTTGCGCTGATTCCGTTTGGTTCGGGGAGAAGGTCGTGTCCTGGAGCGGCGTTT GCGTTGCAAGTTGTGAACTTGACGGTAGCAAGGTTGCTGCAAGGTTTCGAGATTACCAGCGGCCACCTTCCGGTGGATATGGAGGGAGGTTTGGGTCTAA CTATGCCTAAAGCAGCTCCGTTAGAGGTTCAATTGCAGCCTCGTCTCGCCCCTCAACTTTACTGTGTTTGA
AA sequence Show only first row Show all	>Lus10025904 pacid=23177658 polypeptide=Lus10025904 locus=Lus10025904.g ID=Lus10025904.BGIv1.0 annot-version=v1.0 MELIAATNNHILLAISGLLITIFLFYNLRRQRSTTSHPPLPPEPSGGLPILGHLLQFISSKKPLALTLSDMADRHGPIFTIRLGVHLAVVANDPKTVQEC FTTHDRVLASRPKSSPAQYLNYNYAGFGSTPYGSYWRDIRKLAVTQLLSGQRLKSLRHVQVSEINMFVKGLHDTSNSTVVVVISEMFEQLGANMITRLIA GKRYFSYRDGGNKGEEAGDKIGELMKSFMRLCGELVPSDLLPGIGWMNWFCGPVKSMKRIGMELDEVMQSWIDEHKLKKQSSDDEGGQSTDFIDVMLSQI KDDFADQYSPDIIIKATALEGNLPTSKLEMFDHPSYVIVHIDIRQTLILAGADTTSITMTWILCNLLNNNHAMEAVQQELDTKVGRTRAVEYSDIDNLVY LQAVVKETLRLYPPAPMAVPHQAMEDCTIQGYHVPKGTQVFPNLWKIHRDPNSWVDPDKFRPERFLDDDSNNSGSIDLSGKNFALIPFGSGRRSCPGAAF ALQVVNLTVARLLQGFEITSGHLPVDMEGGLGLTMPKAAPLEVQLQPRLAPQLYCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	0	1
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	1.0	0.9342
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	1.4	0.9026
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	3.2	0.8660
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	3.5	0.8669
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	4.5	0.8424
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	5.7	0.8676
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	6.9	0.8652
AT2G27180			unknown protein		Lus10008446 [exp]	11.2	0.8234
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	11.8	0.8085
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	12.0	0.8542

Compare expression of checked genes

Lus10025904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.