Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25130 97 / 7e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038199 [exp] 264 / 1e-86 AT3G25130 111 / 2e-28 unknown protein Lus10022768 [exp] 108 / 8e-26 AT3G25130 106 / 5e-25 unknown protein Lus10011835 [exp] 105 / 2e-25 AT3G25130 104 / 5e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246400 [exp] 115 / 2e-28 AT3G25130 140 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025905 pacid=23177621 polypeptide=Lus10025905 locus=Lus10025905.g ID=Lus10025905.BGIv1.0 annot-version=v1.0 ATGACTGAATTCTCAACTCCATCATCATCATCATCTTCACCACCACCATCCCAGCAATACCATTTCTCAGCACATCTCCTCTCAGAATTCCACAACTCCA TTTGCTCTTTAAAATTCCTCTCTTCCACCAAAAACCCTCTCTACCTCCCTTACTTGATCTTATTATTCTCCTCTTGTTTACTTAAACTCATCTCCTTCCT CATCCCCCCTCTTTTCCTCGCCGCTTTCCTTCTCCTTCTCTCCATCCTCCTCGTTACTATTTTTTTCATTCTTCCAGCTTCTGTGATTCATGGTCAAAAT GTTGACCAAAAAGTCATGACTTTGGAGGCTTTACAACTCTGCAGCATTGTGTTTGATGTTGCAGATCAAGTACTTGAGGAATTTGCTGAAGAAGAATCAC CTGCTGCAATTATTTTAATTGAGGAACCACCTGATGCAGCAGCAATCATGACATTGCCCACCCTTTTGCATCAAAAGGAGGAGCTTGATGACCAATTGGG TGTTCTTTTGGAGGGAAAAGAAGAAGAAGAAGAGGTAGCCAAGCAAGAAAGTGTAAAGTTGAGTACTAAAGTTGAAGATAAAGAGCAAAGGGGAGGCTTG TCCAATTCTAGTTCAGATGACAAAGAAGTCAACTTTTCTTCCCAAAGAAGGTCACAGTCAGATGGAGGAATGACAGAAGCTAGTCCATGGAGCAGTCCGT CGAGTTTAGGGAGCTACGGATCGATGAGAAAGGAGAAAGAGTGGAGGAGGACGCTGGCCTGCAAGCTCTTTGAAGAGAGATATAATAATAATGCTGCTGG CAAGAGTGATGAAGGTATGGACTTGCTTTGGGAGACATATGAGGAGGAGACAGAGTCCTCTGCTTCAGATGATAAAGTGATCAAGCCTAAGACAACAAAG AGCAAGTCCAGGAATAGCAACAGGATTGTACACCATTCTTATGCTGATGATGATGATTGTGGAGAAGAAGAGGTTGGGGGTGATGATGATCATGGTGGGA AGTTGTGCTGTTTGCAGGCTCTGAAGTTCTCAACTGGGAAGATGAAGCTTGGGATGGGGAAGCCTAATCTACTGAAGATCTCAAAGGCTATCAAAGGAAT TGGATGGCTGCATCATCATGTCACTGCTACTACTACTACCAGGCTTCATTCCAGAAAAAAGTTACAACCATTGCATTGA
AA sequence Show only first row Show all	>Lus10025905 pacid=23177621 polypeptide=Lus10025905 locus=Lus10025905.g ID=Lus10025905.BGIv1.0 annot-version=v1.0 MTEFSTPSSSSSSPPPSQQYHFSAHLLSEFHNSICSLKFLSSTKNPLYLPYLILLFSSCLLKLISFLIPPLFLAAFLLLLSILLVTIFFILPASVIHGQN VDQKVMTLEALQLCSIVFDVADQVLEEFAEEESPAAIILIEEPPDAAAIMTLPTLLHQKEELDDQLGVLLEGKEEEEEVAKQESVKLSTKVEDKEQRGGL SNSSSDDKEVNFSSQRRSQSDGGMTEASPWSSPSSLGSYGSMRKEKEWRRTLACKLFEERYNNNAAGKSDEGMDLLWETYEEETESSASDDKVIKPKTTK SKSRNSNRIVHHSYADDDDCGEEEVGGDDDHGGKLCCLQALKFSTGKMKLGMGKPNLLKISKAIKGIGWLHHHVTATTTTRLHSRKKLQPLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25130			unknown protein		Lus10025905 [exp]	0	1
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	3.3	0.8819
AT1G14630			unknown protein		Lus10039139 [exp]	3.5	0.8817
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	7.3	0.8514
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	13.0	0.8595
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	15.9	0.8283
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	16.9	0.8775
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	17.9	0.8462
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	20.1	0.8559
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	21.2	0.8433
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	24.4	0.8341

Compare expression of checked genes

Lus10025905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.