Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25160 348 / 1e-115 ER lumen protein retaining receptor family protein (.1) AT3G25150 343 / 1e-110 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT4G38790 303 / 5e-98 ER lumen protein retaining receptor family protein (.1) AT1G19970 302 / 9e-98 ER lumen protein retaining receptor family protein (.1) AT2G21190 295 / 6e-95 ER lumen protein retaining receptor family protein (.1) AT1G75760 293 / 3e-94 ER lumen protein retaining receptor family protein (.1) AT5G60980 265 / 4e-81 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 242 / 2e-72 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G13730 179 / 2e-49 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G69250 164 / 4e-44 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038198 [exp] 525 / 0 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) Lus10022765 [exp] 520 / 5e-179 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 506 / 2e-173 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003146 [exp] 408 / 1e-138 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10022763 [exp] 363 / 2e-121 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 298 / 4e-96 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 288 / 5e-92 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 287 / 6e-92 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 287 / 1e-91 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246600 [exp] 424 / 2e-141 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246700 [exp] 375 / 8e-126 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 299 / 2e-96 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 297 / 9e-96 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 297 / 1e-95 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.015G058700 [exp] 295 / 4e-92 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 270 / 1e-82 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 211 / 7e-61 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 210 / 3e-60 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.002G257000 [exp] 171 / 2e-46 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10025906 pacid=23177467 polypeptide=Lus10025906 locus=Lus10025906.g ID=Lus10025906.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAGACGAGCGCCGTCAGCAGGAGATCGCCAGCGAAGGCGATTGCCGGATGGGTGGGGCGTCAGTCAACAAGAGTGAAGGTGATCGCCGGAG TGGCGATGTGCCTGTTGACCTTGGTGGGTTTGAAATTTTGTGTCAGAAACCACAGCCATTTCTTCGTCGCCTCCGAATCCATTCACGCCGCCGGGATTCT CGTTCTGGCTTACAAGCTCATCACCACCAAGACCTGCTCCGGGCTGTCACTGAGGAGTCAAGCAGTGACAGCATTGTTCGTAGCAGTGAGAATGGGTTGC AGTGTGTTCTTGGAAGCTAGCCGCATCCACGCAATGCTGGATTTGGCTACACTGTTGTCCACACTGTGGGTTATATACATGATGAGCTTCAAGTTGAAGT CAACCTACATCAAGGAGCTTGACAACATGCCCTTGTACTATCTGATCGTCCCTTCTTTACTCCTTGCTCTCTTCGTCAACCCCTATACTCAATACGGCAT AGTGAGTCAAGTCCTATGGGCCTTTTGCACCTACTTAGAAGCCGTCTCCGTACTTCCTCAGCTCCGATTGATGCAGAACGCAAAGATGATTGAGCCTTTC ACATCTCATTACGTATTCGCACTGGGGATCGCTAGATTCTTGGCTTGTGCACATTGGATCATCATGGTGATTGAAACTCGAGGGAGATATCTGTACATGA TGGGAAGCGGTCACATGTGGTTTATGGTGGCATTCATTGCAGAAATGGTTCAGACCTTCATCTTGGCTGATTTCTGCTACTACTATGTCAAGAGAACAGT GATGGCAGCACCCGTGCAGCAACATGCAATTCCTCCTCCAGATGTTGTTGGCAATGCATTTGTTCATCAATACTACCATATCTTGCGCCAGTCTCCGGAG CTTGTTCATAGGTTTTACCAGGATGTTAGTAAGCTTGGCCGGCCTGACGGCAACGGGATCATGAGTTCCACAACTACAATGCAGGCCATTAATGAGAAGA TACTGTCACTTTTTTGTGGAGATTTCAAAGTTCAAATTCTTACAATCGACTCGCAAGAATCTTACAATGGTGGAGTCCTAGTTCTCGTCACTGGTTATCT GGCTGGAAATGATGATGTCCCGCAGAAGTTTACTCAGAGTTTCTTCTTAGCACCTCAAGAGAAGGGCTATTTTGTTTTCAATGATGTCTTCCGATATGTT GAGGAAACAAAGGTCAATAATGGGATCCCAGATCCAGTCTACGATATGCATGTTCCTCCTACCACTGAAGGTGGTTCTTCCCTTGTTGAGGAAAATCACA TTCATGAGCAAGGACGAATTTTATCTGAGGATGTTAATGGTGGTGAAGTTTATGACCCATCTGACAATGGAGATGCTTTAATTGAAGAGGAGGAAGCACC AGTTGCCGAAGTTGTTGATGAAGTTCCTGAAGATTCACAAATGGCGATTGATTCACAGGTGATCACCGAGTCTGACGCTACGTTCGAGGATGCACCTAAG AAGTCTTATGCTTCCATTGTGAGAGTGATGAAGGCGAACACTGCACCATTCTCGCCGCCTGCTGCTTCTCCACTGAGATCACCTCAGAAGAATCAAGAAG AATTGCCCGCAGCAACTCCATCCCAAGTATCTGAACTACGTGCCTTGAACTCTAATGGGACTGACAGTGGGAGTACCCAAGACACTGAAGCTGAGGGTTC TTCCATCTACCTAAAAGGGTTGCCTTTTGATGCCACTCATTCCTTGCTGGAGAGCGAGTTCAAAAGGTTTGGGACAATCAAGGCTGGTGGTATTCAACTT AGAAATCAAAACGGATTTCACTTTGGCTTTGTGGAATTTGAGGCCTCTAGTGCTATGCAAAGTGCAATTGAGGCTTCTCCTATCATGATCAACGGGTCCC GAGTTGTGGTTGAGGAAAAGCGATCTACTTCTCGAGGGAACCACAGGGGTCGGTTTTCTGGTGCGTACAGAGGGCGAGGAGGCTTCGGAGGGGGCAAGGC TTACGGTGGCAGGAATGGTGGTCGGGGAGGTGGTTATTCAAATCGTGGCAGTGAAGGATATCGGAGAATGGCGAACAATGGAGGGGGGCGTACAGGCCGT TCTGGTGGTCTGCCTATGAATGCTGATCGATGA
AA sequence Show only first row Show all	>Lus10025906 pacid=23177467 polypeptide=Lus10025906 locus=Lus10025906.g ID=Lus10025906.BGIv1.0 annot-version=v1.0 MGSKTSAVSRRSPAKAIAGWVGRQSTRVKVIAGVAMCLLTLVGLKFCVRNHSHFFVASESIHAAGILVLAYKLITTKTCSGLSLRSQAVTALFVAVRMGC SVFLEASRIHAMLDLATLLSTLWVIYMMSFKLKSTYIKELDNMPLYYLIVPSLLLALFVNPYTQYGIVSQVLWAFCTYLEAVSVLPQLRLMQNAKMIEPF TSHYVFALGIARFLACAHWIIMVIETRGRYLYMMGSGHMWFMVAFIAEMVQTFILADFCYYYVKRTVMAAPVQQHAIPPPDVVGNAFVHQYYHILRQSPE LVHRFYQDVSKLGRPDGNGIMSSTTTMQAINEKILSLFCGDFKVQILTIDSQESYNGGVLVLVTGYLAGNDDVPQKFTQSFFLAPQEKGYFVFNDVFRYV EETKVNNGIPDPVYDMHVPPTTEGGSSLVEENHIHEQGRILSEDVNGGEVYDPSDNGDALIEEEEAPVAEVVDEVPEDSQMAIDSQVITESDATFEDAPK KSYASIVRVMKANTAPFSPPAASPLRSPQKNQEELPAATPSQVSELRALNSNGTDSGSTQDTEAEGSSIYLKGLPFDATHSLLESEFKRFGTIKAGGIQL RNQNGFHFGFVEFEASSAMQSAIEASPIMINGSRVVVEEKRSTSRGNHRGRFSGAYRGRGGFGGGKAYGGRNGGRGGGYSNRGSEGYRRMANNGGGRTGR SGGLPMNADR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25150			Nuclear transport factor 2 (NT...		Lus10025906 [exp]	0	1
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	5.7	0.8465
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	14.6	0.8405
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	15.0	0.8303
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	16.7	0.8316
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	20.4	0.8083
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	21.1	0.8335
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	25.5	0.7742
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	29.3	0.8189
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	33.7	0.7697
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	36.7	0.8014

Compare expression of checked genes

Lus10025906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.