Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07210 524 / 0 unknown protein AT5G26890 45 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038194 [exp] 558 / 0 AT3G07210 364 / 2e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245700 [exp] 687 / 0 AT3G07210 602 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025908 pacid=23177490 polypeptide=Lus10025908 locus=Lus10025908.g ID=Lus10025908.BGIv1.0 annot-version=v1.0 ATGGGCATTTTGACGGAGAAATGGTGCTTTTGCAAAGGAGTGAGCAAGTCGGAGAGAACCCAGTCCGCCATTTTCTCCGGAAAGGGTGCGGCCATGGTCA GGATCTCCGGAGCTGGCGGTCAAGTTTCTGGGACTGGGTTCCTCATCCACCGGAATCTCCTCCTCACCACTCATCTTAATATCCCTTCCGTCGCTGCCGC CGAGACCCTGGAGATCCGCCTCCAGAAAGGCGTCCCCGCAACCCTAGTCCCCCACAGGTTTTTCATCACAAGTTCAGTGCTGGACCTTACCATAGTTGGT TTGGATTCCATGGATGGAGACTCGAACGGCCAAGGGAGTCATCACCCTCACTTCTTGAAGACCTGTCCTAAGCCAAGCCTTGATCTAGGAAGCGTTGTTT ACTTTCTAGGATACTTGGAGAAACAAGAGCTTGCTGTTGGTGAAGGGAAGGTCGTTATAGCAACTGACAATTTGGTCAAACTATCCACAGACGGAATCAC TTGGCGTCCTGGATCTGCTGGATTCGATGCGCAAGGGAACCTCTCCTTCATGATATGTGATCCTATGAAGTTGGCCACATCTCCGACTACTAAATCTTCG TTAACTTCCTCTTCCTCCTCATCGTCCTCGTGCAAGAAAGATTCACCCCTGCAGTTTGGTATCCCCATACCGATTATTTGTGATTGGTTGAACCAACATT GGGAAGGAAGCCTCGACGAGCTTACCAAACCCAAAATGCCAATCATCAGATTGATGTCTACTGGCCAGAAGAGTGAGCATTCATGTGCATCTTTCTCGTT GAGGCAGGTGTTTAAGTCTGCCGAACCTGATCAAGATGGAACTCCATCATCGTCAAACACTGTATCGAAGACCAGAGACCAAGCCATGCCAGCAGGCAAG GCAGAAATCCGGAATTCTGATCCCCAAGGAGCACATTTGCAGGGCATCCCGGCGCCTGAAATATACGAATCGGCGAAACTGACTGCTGGTCCGGTCGAAA AGAAAGATACCATCAAACAACAACATACGCAGCAGCTGCTAGATATCAATTTCCCTCCCAAGATTACCAAAGCTTCGGCTCAACCAAAGCTGCCATCCAA CTGTGATGACAACTATGCCGAGATATCATCGACAGGTTCGGTGAATGGGGCCGGAAGTGAGGTGGAATCGAGTTCCTCTCCCGTGGGGGTGTCGGAAATG CACAATGGAGTAGGAGGATACAGCAGCGAGGGAGAGACTACAATGTACTCGGCCGAAACTGCAGAGAGCCGGAATTATACGAGTCCTAGAGAAGAGAAGT TCCAGCAAGTTGGTAGGAGCCAGAGCTGTGTAAGCTACAACAGATGGACGACTGTGCATCGGACTCCGATACCACGCAGGGCAATGCTGGAGCAGCAGAG GAGCTACATCCATGGGAAAAAGGTGTACTCACAAGGGGCGACATCGCAAAGGAGTAATGACTACTTTAGCCCTACTGTGTCGTCGATTATGAAGAACAGA AGTGGTGTCGAGCAGCAGCCACCAGTCAGGAGAAAGCAACAAGCTCCTGCTGCTACTGCTACTACAGCGGTTCACTCTTCTCCTAGGTGGAATTTTTGA
AA sequence Show only first row Show all	>Lus10025908 pacid=23177490 polypeptide=Lus10025908 locus=Lus10025908.g ID=Lus10025908.BGIv1.0 annot-version=v1.0 MGILTEKWCFCKGVSKSERTQSAIFSGKGAAMVRISGAGGQVSGTGFLIHRNLLLTTHLNIPSVAAAETLEIRLQKGVPATLVPHRFFITSSVLDLTIVG LDSMDGDSNGQGSHHPHFLKTCPKPSLDLGSVVYFLGYLEKQELAVGEGKVVIATDNLVKLSTDGITWRPGSAGFDAQGNLSFMICDPMKLATSPTTKSS LTSSSSSSSSCKKDSPLQFGIPIPIICDWLNQHWEGSLDELTKPKMPIIRLMSTGQKSEHSCASFSLRQVFKSAEPDQDGTPSSSNTVSKTRDQAMPAGK AEIRNSDPQGAHLQGIPAPEIYESAKLTAGPVEKKDTIKQQHTQQLLDINFPPKITKASAQPKLPSNCDDNYAEISSTGSVNGAGSEVESSSSPVGVSEM HNGVGGYSSEGETTMYSAETAESRNYTSPREEKFQQVGRSQSCVSYNRWTTVHRTPIPRRAMLEQQRSYIHGKKVYSQGATSQRSNDYFSPTVSSIMKNR SGVEQQPPVRRKQQAPAATATTAVHSSPRWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07210			unknown protein		Lus10025908 [exp]	0	1
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10014903 [exp]	1.0	0.9251
AT1G35780			unknown protein		Lus10020921 [exp]	1.4	0.9139
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	3.5	0.9073
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	7.1	0.8824
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	8.1	0.8779
AT3G17120			unknown protein		Lus10017073 [exp]	8.3	0.8852
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	11.1	0.8504
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	11.2	0.9127
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	12.4	0.8978
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	14.9	0.8908

Compare expression of checked genes

Lus10025908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.