Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25110 493 / 7e-176 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 492 / 2e-175 Acyl-ACP thioesterase (.1) AT1G08510 257 / 2e-82 FATB fatty acyl-ACP thioesterases B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038190 [exp] 615 / 0 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10011839 [exp] 592 / 0 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 577 / 0 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1) Lus10033072 [exp] 266 / 8e-86 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 266 / 1e-85 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 248 / 8e-79 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 245 / 1e-77 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 232 / 1e-72 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 232 / 1e-72 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245600 [exp] 514 / 0 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1) Potri.012G101500 [exp] 270 / 1e-87 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 262 / 2e-84 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 261 / 9e-84 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 261 / 9e-84 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 258 / 1e-82 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 246 / 1e-78 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 236 / 3e-74 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 216 / 8e-67 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 216 / 9e-67 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10025912 pacid=23177452 polypeptide=Lus10025912 locus=Lus10025912.g ID=Lus10025912.BGIv1.0 annot-version=v1.0 ATGGCGATGAACCTCCCCGCCTCCAATGTAACCGACCACCATATCAACGCCCTTCTTCCCCAATGCAGATTATTGGCCCCACACTCCCGTCCCTTCCCTA CTTTCCCCCTCCGCCGGAGCCTTGCTCTCTCCGCCTCCCTCTGCAGATCGTCGCTTCAGTCGGTGGATACTGTCTTATCGGCTGATTCCGTTGAATCTGG GTCTAGGACTGCCAGCTTGGCTGATAGGCTGCGGCTAGGGAGCTTGACCGAGGATGGATTGTCTTATAAGGAGAAGTTCATTGTCAGGTGCTACGAAGTT GGGATTAACAAGACGGCCACCGTTGAGACCATTGCCAATCTCTTGCAGGAGGTAGGGGGTAATCATGCTCAGAGTGTTGGATTCTCCACAGATGGATTTG CGACGACTCCCACCATGAGGAAGTTGCATCTCATCTGGGTGACTGCTCGCATGCACATTGAAATTTACAGATACCCAGCTTGGAGTGATATAGTTGAAAT AGAGACGTGGTGCCAAAGTGAAGGTAGGATAGGGACCAGACGTGATTGGATCATAAAGGATTATTCCAATGGTGAAGTTATCGGGAGAGCTACTAGCAAG TGGGTGATGATGAACCAAGATACTAGGCGGCTTCAAAAAGTGAATGATGAAGTTCGTGAGGAGTACTTAGTCTTCTGTCCACGCGAACCAAGATTATCAT TCCCTGAGGAAAACAACCGTAGCTTAAAAAAGATTCTAAAGCTAGAAGATCCTGCTCAACATTTTAAGCTGGGACTGATACCAAGAAGAGCTGATCTGGA CATGAATCAACATGTGAACAACGTTGCCTACATTGGATGGGTTCTCGAGAGCTTGCCTCAAGAAGTCATTGACACATACGAACTGCAAACAATCACCTTA GATTACAGAAGAGAGTGCCAACAAGACGATGTGGTCGATTCGCTCACTAGTGTCGAACCTGTTGACGATTCGGAACACCGTGTGAAAGCTAATGGGTCAG CTTTGTCAGCTGATGAGTCCCTCAACTTCCTGCACCTGCTTAGACTGTCAGGTGAGAAAGGACTGGAGATCAACCGGGGCCGCACAGAATGGAGAAGGAA ACTAGGGAGGTGA
AA sequence Show only first row Show all	>Lus10025912 pacid=23177452 polypeptide=Lus10025912 locus=Lus10025912.g ID=Lus10025912.BGIv1.0 annot-version=v1.0 MAMNLPASNVTDHHINALLPQCRLLAPHSRPFPTFPLRRSLALSASLCRSSLQSVDTVLSADSVESGSRTASLADRLRLGSLTEDGLSYKEKFIVRCYEV GINKTATVETIANLLQEVGGNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDIVEIETWCQSEGRIGTRRDWIIKDYSNGEVIGRATSK WVMMNQDTRRLQKVNDEVREEYLVFCPREPRLSFPEENNRSLKKILKLEDPAQHFKLGLIPRRADLDMNQHVNNVAYIGWVLESLPQEVIDTYELQTITL DYRRECQQDDVVDSLTSVEPVDDSEHRVKANGSALSADESLNFLHLLRLSGEKGLEINRGRTEWRRKLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	6.5	0.9011
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	10.0	0.8890
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	10.1	0.8910
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	11.0	0.8777
					Lus10038634 [exp]	13.0	0.8927
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	14.9	0.8859
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	21.7	0.8230
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	21.9	0.8108
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	21.9	0.8711
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	29.9	0.8688

Compare expression of checked genes

Lus10025912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.