Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 80 / 3e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 80 / 7e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 80 / 4e-17 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 71 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18090 56 / 6e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 50 / 1e-07 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 52 / 2e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 51 / 2e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 49 / 1e-06 Transcriptional factor B3 family protein (.1) AT4G31650 49 / 1e-06 B3 REM6 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038189 [exp] 436 / 2e-156 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 102 / 3e-24 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 99 / 4e-24 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 95 / 7e-23 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 92 / 6e-22 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 93 / 8e-22 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 93 / 1e-21 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 91 / 1e-21 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 90 / 2e-21 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 92 / 4e-21 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 84 / 5e-19 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 74 / 4e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 73 / 2e-14 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 70 / 3e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 70 / 1e-13 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 66 / 3e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 61 / 1e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 54 / 4e-08 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 49 / 1e-06 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025913 pacid=23177503 polypeptide=Lus10025913 locus=Lus10025913.g ID=Lus10025913.BGIv1.0 annot-version=v1.0 ATGGATTCTCCCTGGGGCGGACCACGGTTCTTCAAAATACTTCTGCAGCACAACATTGAAGCCAACTACATGCTGATTCCTAAGAAATTCGCAAAGGAGC ATTGTCGTGAACTTTCAAATCAGATCATCCTCAAAGTTCCAAACGGTGAGGCTTGGCCGGTGGAGTTGGTGAGAGATGATGAAGCTAAAGGAGGACTCGT TTGGTTTGGCAAAGGGTGGCAAAAGTTCTCAGAACGTTACTGTTTCCGACACGGCCATTTCCTGCTCTTTGAGCTTCTCCACAACTCTTCCTTCTTAGTC CTCATATTTAATCGCACCGCTGCGGAGATCGACTACTCGAAACAGGATTGGGAACTCGCTCAGACTGAGACAATGCTGGAAAGTGCTGATGTTGCAACAG ATGTTGCAGGCAAAGGTGAAAACTTGTCAAGTACAAAGAAGACCCCAGTTGTTGTTTCTAAGAAGCTTTCATCTCAAAGGGCTTCCAGCTCAGCTGCCGC CAATGTTAATGTTCTGCCGTCTTTCAAGAAAGTTATTAACAGGTCGTGTCCTGCTGTGCCAATGAAATTCGTGGAAAAATATGTGACGAAATCAAGCGAG GAGATGGTGGAGCTTAAAGTTGATGGTGAATCTTGGGCGGTGAAGCTGAAGATCTATCAACAGGCCAGTTACTGTCAACTGTCCGAAGGTTGGATCCAGT TTGCTAAGGACAACAATCTGAAAGCAGGGGACACTTGCACCTTTGTACTCGCTAGTGCAACCAGTTTCAATGTCCACATCTCTAGGTGTTGA
AA sequence Show only first row Show all	>Lus10025913 pacid=23177503 polypeptide=Lus10025913 locus=Lus10025913.g ID=Lus10025913.BGIv1.0 annot-version=v1.0 MDSPWGGPRFFKILLQHNIEANYMLIPKKFAKEHCRELSNQIILKVPNGEAWPVELVRDDEAKGGLVWFGKGWQKFSERYCFRHGHFLLFELLHNSSFLV LIFNRTAAEIDYSKQDWELAQTETMLESADVATDVAGKGENLSSTKKTPVVVSKKLSSQRASSSAAANVNVLPSFKKVINRSCPAVPMKFVEKYVTKSSE EMVELKVDGESWAVKLKIYQQASYCQLSEGWIQFAKDNNLKAGDTCTFVLASATSFNVHISRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	5.5	0.7274
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	7.7	0.7274
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	9.5	0.7274
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	11.0	0.7274
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	11.7	0.6398
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	12.2	0.7274
					Lus10017294 [exp]	13.4	0.7274
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	14.5	0.7274
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10023447 [exp]	14.7	0.5825
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	15.5	0.7274

Compare expression of checked genes

Lus10025913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.