Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25060 601 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 396 / 5e-130 MEF22 mitochondrial editing factor 22 (.1) AT2G13600 353 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 355 / 5e-113 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 341 / 2e-108 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 339 / 3e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 343 / 4e-108 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 330 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 329 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 333 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038187 [exp] 1072 / 0 AT3G25060 630 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 389 / 2e-125 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 384 / 6e-124 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10017446 [exp] 383 / 2e-123 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 363 / 3e-117 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 358 / 4e-115 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 347 / 2e-111 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 354 / 3e-111 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 360 / 1e-110 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245200 [exp] 754 / 0 AT3G25060 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 391 / 1e-127 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G191000 [exp] 378 / 1e-121 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 366 / 3e-117 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 357 / 7e-114 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 351 / 3e-112 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 347 / 2e-111 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 347 / 3e-111 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.016G128900 [exp] 346 / 7e-111 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 350 / 3e-110 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025915 pacid=23177654 polypeptide=Lus10025915 locus=Lus10025915.g ID=Lus10025915.BGIv1.0 annot-version=v1.0 ATGGTCACTTCCGGTCTCTACGCTAATGGAAACTACGTGGGTTGCTTAATCTCTTCCTATTCACGGGATGGCAGAATTACAACTGCCCGCCAGGTGTTCG ACAAATTGCCTAAGAGAGGTGTCGAGGCGTGGAACTCGATCATTATTGCATACTCTCGTGAACGTTGCCCCAATCAAGTTCTGGGTCTTTACCATAGAAT GATACCTGAGGGAGTCAGACCTGACAGCTCCACTTTTACTTTGGCACTCAAGGCTTGTTCGAGCGTGACGGACTTAGATGTGGGAAAAGACGTTTGGCGA CAAGCAGTGGCTTTCGGGTACCAAGGTGATGTGTTTGTTGCGTCGTCTGTTTTAAATTTATTTGCAAAGTGTGGGAGAATGGATGAAGCAAAGAAGGTGT TTGATACGATGGTGAAAAGAGATGTTGTCAGTTGGACAACTATGGTGACTGGGTTTATTAGGAGTGGACAGCCATTAGAGGCAGTGGATATGTACAGGAC GATGCAAAAGGAAAGGATTGAAGGAGATGGGGTTGTAATGGTTGGTTTGATCAAGGCGTGCTCTGATCTTGGAGAAACTAAGGTGGGTCATTCTGTTCAC GGATACATTATTAAGAGAGAGATGCATATGAATGATGTTGTTGTTCAAACCAGCCTTGTAGATTTGTATGCTAAAAACGGACATTTGGAGCTTGCTTCTC GTGTTTTTGGAGCGATGCGTTTCCAAAATGCTGCTTCTTGGGGTGCACTAATCTCTGGTTATGCTCAAAATGGTTTTGCAGGAAATGCACTCGAATCTTT TGTCGATATGCAGAGTCGCGGGATAAAGCCGGATTCGGTTGCTCTTGTCAGCGCAGTTTTGGCTTGTTCACAAATAGGACATTTGAAGCTAGGCAAGTCT ATACACGGGTATGTCCTGAGAAGGCTTGACGTGGAACAGAATTTACTCACTGCTTTGATAGACTTATATGCGAAATGTGGATCTCTTGTTAGTGCTCGAG TGTTGTTTGATCAGGCGATTGCAAGAGATGTGATCATGTGGAATGCCATGATTTCCAGCTACGGGATCCATGGTCGTGGCAATGAGGCCCTCTCATTATT TCTAGAGATGACAGGAACAGACGCGAAACCAGATCATACAACTTTTGCTTCACTTCTTTCAGCTTTGAGTCACTCAGGATTAGTGGAAGCAGGCCAATAT TGGTTCCATAAAATGGTCTATGAATTTAAGATTCAGGCTAGTGAAAAGCATCTTGTGTGCATGGTCGATCTTTTATCCCGAGCAGGACGAGTAGAAGAAG CCTTTCAGCTCATCAAGTCGATGGATTCTGAACCAGGACTTGCTGTTTGGGTAGCCCTTTTGTCAGGCTGCCATAATTATAAGAACATTTTAATTGGAGA AGAAGCAGCGAAGAAGATACTTGCATCAAATGCGAACGACTCTGGAACTTACTCGTTAGTTTCAAACTTCTTTTCCATGGCAAAGAAGTGGGATGAAGTC TCTGGTTCAAGGAGGATGATGAAAAGGACAGGATTGAGGAAAGTACCTGGTTTTAGTGCAGTGGAAGTGAATGGCAACCATCAAGCTTTTCTGATGGAAA ACAGGAACCACCATCAGTACGAAGATATCATACAAATACTGGATAATTTGGCTCATGAGATGACATCCATCAGATCTACTCATGATGTGGAATGCTTCAT GTATGATCCGGCTTCCTTTTTGTGA
AA sequence Show only first row Show all	>Lus10025915 pacid=23177654 polypeptide=Lus10025915 locus=Lus10025915.g ID=Lus10025915.BGIv1.0 annot-version=v1.0 MVTSGLYANGNYVGCLISSYSRDGRITTARQVFDKLPKRGVEAWNSIIIAYSRERCPNQVLGLYHRMIPEGVRPDSSTFTLALKACSSVTDLDVGKDVWR QAVAFGYQGDVFVASSVLNLFAKCGRMDEAKKVFDTMVKRDVVSWTTMVTGFIRSGQPLEAVDMYRTMQKERIEGDGVVMVGLIKACSDLGETKVGHSVH GYIIKREMHMNDVVVQTSLVDLYAKNGHLELASRVFGAMRFQNAASWGALISGYAQNGFAGNALESFVDMQSRGIKPDSVALVSAVLACSQIGHLKLGKS IHGYVLRRLDVEQNLLTALIDLYAKCGSLVSARVLFDQAIARDVIMWNAMISSYGIHGRGNEALSLFLEMTGTDAKPDHTTFASLLSALSHSGLVEAGQY WFHKMVYEFKIQASEKHLVCMVDLLSRAGRVEEAFQLIKSMDSEPGLAVWVALLSGCHNYKNILIGEEAAKKILASNANDSGTYSLVSNFFSMAKKWDEV SGSRRMMKRTGLRKVPGFSAVEVNGNHQAFLMENRNHHQYEDIIQILDNLAHEMTSIRSTHDVECFMYDPASFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	0	1
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	1.7	0.8405
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	2.4	0.8426
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	7.9	0.8482
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10037193 [exp]	14.6	0.7738
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10014294 [exp]	15.0	0.7724
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	15.7	0.8334
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	18.4	0.8127
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10011421 [exp]	21.0	0.7962
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	21.2	0.8186
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	22.2	0.8051

Compare expression of checked genes

Lus10025915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.