Plant FIBer expression Database

Lus10025916 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07180 724 / 0 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038186
[exp]
1119 / 0 AT3G07180 730 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022778
[exp]
411 / 2e-138 AT3G07180 357 / 2e-117 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022779
[exp]
0 / 1 AT3G07180 105 / 9e-40 GPI transamidase component PIG-S-related (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G245000
[exp]
764 / 0 AT3G07180 671 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Potri.002G244801
[exp]
541 / 0 AT3G07180 526 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10510 PIG-S Phosphatidylinositol-glycan biosynthesis class S protein
Representative CDS sequence
>Lus10025916 pacid=23177445 polypeptide=Lus10025916 locus=Lus10025916.g ID=Lus10025916.BGIv1.0 annot-version=v1.0
ATGTCAGAGATTTCAGAGCTCCGTCCCATCACAGAACCGACGCCGACGACATTGGGAGCTTCTGCAGAAGAAGCATTGCCAAGCCTATCGGAGTTAGATT
TCGACCCGAAAATCATGCGCAAGACGAAACCCGGACTGAAGCGGCTTTTTCTCACCATCTCTGTCCTTCTCTCCTTCCTCCTAGGCTTTCCCTTCTTATG
GAGAACCGTCGAAATCTACCGCTCGCCGCTTCCGTTCGACGACATAGACACACTGTCAAAAGAAATCGAGTCCAGTCCAGTACAGTTCCCTTGTCATTTC
CAAGCAGTGTTCCTCAACTTCGAATCGAGTTCTAGTAGCAACAGTCTTGATCCGTCCGATCTTAGGACTTCGATCCTCGCCGGGATGACTAAATTGACCT
CCCAAGCTCAAGCCCGTCAATGTGGCTCTTGCGGTGGAAATTTCACTCTCTCGGTAACTGTAGACTCCGGTGACGGTGCTTGCAGACGATCGGATGAACA
AGGTAGTTTATGCTCATACAAATGTGGTAGAATAGGGGCTGTGAATTTTGATGATGATGAGGGCGTGGATGAAGCTTTAAGGTCTGTTCTGGACGAGAGT
TGTTCTGATTTCAGCGGGAAAGTGTATACTGTGGTGGTAGTGAATGGGAGTGGTGAAGAGTCCAGGGCTTTGGTGGGGAAGTACCGTCATGGGTGGATTG
TGGGAAAGAAATTAGAAGCTGAGGCGGTGATGGGGAGAGTGGCTGAGATGTTCGTAGGGGTCTTTATGAATGGAGGGAGAGATGAGGGAGCTATTCAAGG
GGAATTCATGCCAGTTGGTGCTGATGGCAGAGTTGTTCTCTCATTTAATTTGCTCAATGCAAATCCAGATGATTGGGTTTATGATTGGGACTTCCAGGGA
ATTGATGCGACTCTCTTGAGTCCTGTGATCGAAGCATTAAAACCTATCGCAAATGTAACCGTGGAAAGCCAAGTCTTGTACCACACTCCGAAGTCTTCAT
TTTCGTACTGGGATGAGAGTTTGCAGAGCTATATCTTCAGCACGGGAGACCTCCCTTTCTTTGTGAACTCAAACGAATGGCACTTAGATACATCTGTTGC
AGCTGGTGGGCGCTCGAAGATATTGCAATTTGTGGTATATGTGCCATCTGCAAAGGAATGCCCTCTTTTCCTACAACTTCCAAATGGAGATATTTCTAGG
ACAAATGGCTTCATATCTCCGATGTGGGGGGGCATTATGGTCTGGAATCCCCAACGCAGCCTAAAGGATTCAACAAACAAGCCTCCAGCTAGACAATTAA
TGTCTCCTGATGATCTTCAAGAGATATTTGGAGTTCTCCTGGGGCAACTGCGACAACTGTTTGGTCTAAAATCTGACGGCATTTACATTGGTGCAGCAGA
TGCCTTGTCACGGCAGCACACATGCTTTAATCTTCATTCAAGCTGCATGACTCTTGGATCTCTTTCCAGACTGGTTCAATCACTGCCGAGGATGATCATA
AAGGACGAGATAGGAAAGCAGGTGAAGTTTTCTCTTGAAGCAGCCAAATTAGCTCAGAGCAATGCGTCTGTTGGACTTTATGAGGCTTCGGCTGTGTTAT
CGCGGCAAGCCAGGGCCTTAGCAGAAGATGCCTTCTTCCACCCGTCTATTATGTCCGTCAGCTACTTCTCCTTTGAGCATTGCTTTGCCGTCTATTCGCC
CTTCTTCCTGCCAGTGTCGTTGCACGTCCTCCTTGCTGCACTAAGAGAATGGAGAAGATACAAGCAAGAAAAGTCGAAGTACTTGCTGTGGAAGGCTAAA
GTAAAGAAGGCTTAA
AA sequence
>Lus10025916 pacid=23177445 polypeptide=Lus10025916 locus=Lus10025916.g ID=Lus10025916.BGIv1.0 annot-version=v1.0
MSEISELRPITEPTPTTLGASAEEALPSLSELDFDPKIMRKTKPGLKRLFLTISVLLSFLLGFPFLWRTVEIYRSPLPFDDIDTLSKEIESSPVQFPCHF
QAVFLNFESSSSSNSLDPSDLRTSILAGMTKLTSQAQARQCGSCGGNFTLSVTVDSGDGACRRSDEQGSLCSYKCGRIGAVNFDDDEGVDEALRSVLDES
CSDFSGKVYTVVVVNGSGEESRALVGKYRHGWIVGKKLEAEAVMGRVAEMFVGVFMNGGRDEGAIQGEFMPVGADGRVVLSFNLLNANPDDWVYDWDFQG
IDATLLSPVIEALKPIANVTVESQVLYHTPKSSFSYWDESLQSYIFSTGDLPFFVNSNEWHLDTSVAAGGRSKILQFVVYVPSAKECPLFLQLPNGDISR
TNGFISPMWGGIMVWNPQRSLKDSTNKPPARQLMSPDDLQEIFGVLLGQLRQLFGLKSDGIYIGAADALSRQHTCFNLHSSCMTLGSLSRLVQSLPRMII
KDEIGKQVKFSLEAAKLAQSNASVGLYEASAVLSRQARALAEDAFFHPSIMSVSYFSFEHCFAVYSPFFLPVSLHVLLAALREWRRYKQEKSKYLLWKAK
VKKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07180 GPI transamidase component PIG... Lus10025916
[exp]
0 1
AT3G12380 ATARP5 actin-related protein 5 (.1.2) Lus10040281
[exp]
20.8 0.7749
AT1G70350 unknown protein Lus10029157
[exp]
23.4 0.7778
AT5G06950 bZIP TGA2, AHBP-1B bZIP transcription factor fami... Lus10000025
[exp]
27.5 0.7162
AT3G25680 unknown protein Lus10035054
[exp]
43.0 0.7563
AT1G71120 GLIP6 GDSL-motif lipase/hydrolase 6 ... Lus10034635
[exp]
64.7 0.7034
AT5G43680 unknown protein Lus10040152
[exp]
68.8 0.7464
AT5G03415 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) Lus10023926
[exp]
102.4 0.7309
AT5G66240 Transducin/WD40 repeat-like su... Lus10017157
[exp]
136.7 0.7105
AT5G59180 NRPB7 DNA-directed RNA polymerase II... Lus10004986
[exp]
145.6 0.7100
AT2G16940 Splicing factor, CC1-like (.1.... Lus10027830
[exp]
201.5 0.6808

Lus10025916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.